Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
MSH6P52701 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
MSH6P52701 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
MSH6P52701 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
MSH6P52701 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
MSH6P52701 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC21.62■■□□□ 1.05
MSH6P52701 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC21.62■■□□□ 1.05
MSH6P52701 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
MSH6P52701 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
MSH6P52701 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
MSH6P52701 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
MSH6P52701 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH6P52701 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
MSH6P52701 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH6P52701 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
MSH6P52701 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
MSH6P52701 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC21.61■■□□□ 1.05
MSH6P52701 AL354877.1-201ENST00000424412 413 ntBASIC21.61■■□□□ 1.05
MSH6P52701 FAM8A4P-201ENST00000435433 1213 ntBASIC21.61■■□□□ 1.05
MSH6P52701 AC012618.1-201ENST00000461223 412 ntBASIC21.61■■□□□ 1.05
MSH6P52701 AC073352.2-201ENST00000609385 439 ntBASIC21.61■■□□□ 1.05
MSH6P52701 COX6A1P2-201ENST00000620597 330 ntBASIC21.61■■□□□ 1.05
MSH6P52701 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH6P52701 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH6P52701 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH6P52701 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH6P52701 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH6P52701 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH6P52701 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC21.61■■□□□ 1.05
MSH6P52701 GCK-202ENST00000345378 2421 ntTSL 2 BASIC21.61■■□□□ 1.05
MSH6P52701 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH6P52701 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
MSH6P52701 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH6P52701 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC21.61■■□□□ 1.05
MSH6P52701 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
MSH6P52701 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH6P52701 AC114812.1-204ENST00000449669 728 ntBASIC21.61■■□□□ 1.05
MSH6P52701 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC21.61■■□□□ 1.05
MSH6P52701 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
MSH6P52701 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC21.61■■□□□ 1.05
MSH6P52701 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC21.61■■□□□ 1.05
MSH6P52701 NPM1P43-201ENST00000558669 786 ntBASIC21.61■■□□□ 1.05
MSH6P52701 CENPX-208ENST00000584347 799 ntTSL 2 BASIC21.61■■□□□ 1.05
MSH6P52701 ENPP7P14-201ENST00000621765 1040 ntBASIC21.61■■□□□ 1.05
MSH6P52701 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC21.61■■□□□ 1.05
MSH6P52701 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
MSH6P52701 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH6P52701 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
MSH6P52701 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
MSH6P52701 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH6P52701 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC21.6■■□□□ 1.05
MSH6P52701 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
MSH6P52701 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
MSH6P52701 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH6P52701 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
MSH6P52701 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH6P52701 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC21.6■■□□□ 1.05
MSH6P52701 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC21.6■■□□□ 1.05
MSH6P52701 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC21.6■■□□□ 1.05
MSH6P52701 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC21.6■■□□□ 1.05
MSH6P52701 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH6P52701 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH6P52701 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH6P52701 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH6P52701 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC21.6■■□□□ 1.05
MSH6P52701 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH6P52701 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH6P52701 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC21.6■■□□□ 1.05
MSH6P52701 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH6P52701 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH6P52701 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
MSH6P52701 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC21.6■■□□□ 1.05
MSH6P52701 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC21.6■■□□□ 1.05
MSH6P52701 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC21.6■■□□□ 1.05
MSH6P52701 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
MSH6P52701 AC098935.1-201ENST00000446057 611 ntBASIC21.6■■□□□ 1.05
MSH6P52701 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC21.6■■□□□ 1.05
MSH6P52701 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC21.6■■□□□ 1.05
MSH6P52701 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC21.6■■□□□ 1.05
MSH6P52701 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
MSH6P52701 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC21.6■■□□□ 1.05
MSH6P52701 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
MSH6P52701 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
MSH6P52701 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
MSH6P52701 AC022748.3-201ENST00000621828 275 ntBASIC21.6■■□□□ 1.05
MSH6P52701 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC21.6■■□□□ 1.05
MSH6P52701 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC21.59■■□□□ 1.05
MSH6P52701 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC21.59■■□□□ 1.05
MSH6P52701 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MSH6P52701 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
MSH6P52701 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC21.59■■□□□ 1.05
MSH6P52701 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
MSH6P52701 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MSH6P52701 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MSH6P52701 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC21.59■■□□□ 1.05
MSH6P52701 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
MSH6P52701 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC21.59■■□□□ 1.05
MSH6P52701 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
MSH6P52701 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
MSH6P52701 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms