Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC20.29■□□□□ 0.84
RXRBP28702 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC20.29■□□□□ 0.84
RXRBP28702 AL109837.1-201ENST00000603272 613 ntBASIC20.29■□□□□ 0.84
RXRBP28702 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RXRBP28702 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RXRBP28702 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
RXRBP28702 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC20.29■□□□□ 0.84
RXRBP28702 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC20.29■□□□□ 0.84
RXRBP28702 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RXRBP28702 NF2-208ENST00000403435 2568 ntTSL 5 BASIC20.29■□□□□ 0.84
RXRBP28702 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RXRBP28702 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
RXRBP28702 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RXRBP28702 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RXRBP28702 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RXRBP28702 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RXRBP28702 KRT17P4-201ENST00000429445 819 ntBASIC20.28■□□□□ 0.84
RXRBP28702 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC20.28■□□□□ 0.84
RXRBP28702 CHCHD2P9-201ENST00000461726 456 ntBASIC20.28■□□□□ 0.84
RXRBP28702 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RXRBP28702 CHTF8-207ENST00000520529 475 ntTSL 2 BASIC20.28■□□□□ 0.84
RXRBP28702 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC20.28■□□□□ 0.84
RXRBP28702 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC20.28■□□□□ 0.84
RXRBP28702 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
RXRBP28702 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
RXRBP28702 AC107464.3-201ENST00000609172 737 ntBASIC20.28■□□□□ 0.84
RXRBP28702 PTPN20CP-201ENST00000614090 920 ntBASIC20.28■□□□□ 0.84
RXRBP28702 AC090502.4-201ENST00000551714 1386 ntBASIC20.28■□□□□ 0.84
RXRBP28702 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RXRBP28702 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC20.28■□□□□ 0.84
RXRBP28702 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RXRBP28702 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RXRBP28702 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RXRBP28702 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RXRBP28702 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RXRBP28702 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC20.27■□□□□ 0.84
RXRBP28702 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RXRBP28702 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RXRBP28702 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RXRBP28702 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RXRBP28702 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RXRBP28702 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC20.27■□□□□ 0.84
RXRBP28702 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC20.27■□□□□ 0.84
RXRBP28702 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RXRBP28702 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RXRBP28702 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RXRBP28702 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC20.27■□□□□ 0.84
RXRBP28702 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC20.27■□□□□ 0.84
RXRBP28702 IGHEP1-201ENST00000521393 651 ntBASIC20.27■□□□□ 0.84
RXRBP28702 NAT9-220ENST00000582870 896 ntTSL 5 BASIC20.27■□□□□ 0.84
RXRBP28702 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
RXRBP28702 AC002472.4-201ENST00000641915 272 ntBASIC20.27■□□□□ 0.84
RXRBP28702 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RXRBP28702 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC20.27■□□□□ 0.84
RXRBP28702 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
RXRBP28702 AL592424.1-201ENST00000563624 1536 ntBASIC20.27■□□□□ 0.83
RXRBP28702 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC20.27■□□□□ 0.83
RXRBP28702 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC20.27■□□□□ 0.83
RXRBP28702 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RXRBP28702 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC20.26■□□□□ 0.83
RXRBP28702 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RXRBP28702 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RXRBP28702 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC20.26■□□□□ 0.83
RXRBP28702 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RXRBP28702 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RXRBP28702 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RXRBP28702 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC20.26■□□□□ 0.83
RXRBP28702 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC20.26■□□□□ 0.83
RXRBP28702 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
RXRBP28702 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RXRBP28702 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RXRBP28702 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC20.26■□□□□ 0.83
RXRBP28702 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RXRBP28702 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC20.26■□□□□ 0.83
RXRBP28702 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
RXRBP28702 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC20.26■□□□□ 0.83
RXRBP28702 AC084752.1-201ENST00000509766 622 ntBASIC20.26■□□□□ 0.83
RXRBP28702 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC20.26■□□□□ 0.83
RXRBP28702 TMCO5B-205ENST00000530020 894 ntBASIC20.26■□□□□ 0.83
RXRBP28702 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC20.26■□□□□ 0.83
RXRBP28702 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
RXRBP28702 AC009955.4-201ENST00000597192 544 ntBASIC20.26■□□□□ 0.83
RXRBP28702 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
RXRBP28702 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
RXRBP28702 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RXRBP28702 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
RXRBP28702 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC20.26■□□□□ 0.83
RXRBP28702 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
RXRBP28702 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC20.25■□□□□ 0.83
RXRBP28702 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC20.25■□□□□ 0.83
RXRBP28702 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC20.25■□□□□ 0.83
RXRBP28702 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC20.25■□□□□ 0.83
RXRBP28702 AL138781.2-201ENST00000617896 1843 ntBASIC20.25■□□□□ 0.83
RXRBP28702 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
RXRBP28702 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
RXRBP28702 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RXRBP28702 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RXRBP28702 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RXRBP28702 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
RXRBP28702 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms