Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC13.84□□□□□ -0.19
COL8A1P27658 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL8A1P27658 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
COL8A1P27658 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
COL8A1P27658 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC13.84□□□□□ -0.19
COL8A1P27658 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
COL8A1P27658 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL8A1P27658 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL8A1P27658 KRTAP10-13P-201ENST00000412914 571 ntBASIC13.84□□□□□ -0.19
COL8A1P27658 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC13.84□□□□□ -0.19
COL8A1P27658 VDAC1P7-201ENST00000462417 847 ntBASIC13.84□□□□□ -0.19
COL8A1P27658 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL8A1P27658 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC13.84□□□□□ -0.19
COL8A1P27658 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC13.84□□□□□ -0.19
COL8A1P27658 AC120045.2-201ENST00000567334 178 ntBASIC13.84□□□□□ -0.19
COL8A1P27658 KLK3-207ENST00000595952 969 ntTSL 3 BASIC13.84□□□□□ -0.19
COL8A1P27658 AL451050.2-201ENST00000606967 682 ntBASIC13.84□□□□□ -0.19
COL8A1P27658 METTL26-214ENST00000614890 801 ntTSL 3 BASIC13.84□□□□□ -0.19
COL8A1P27658 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
COL8A1P27658 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
COL8A1P27658 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC13.84□□□□□ -0.19
COL8A1P27658 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL8A1P27658 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL8A1P27658 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL8A1P27658 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC13.84□□□□□ -0.19
COL8A1P27658 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC13.84□□□□□ -0.19
COL8A1P27658 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL8A1P27658 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL8A1P27658 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL8A1P27658 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL8A1P27658 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL8A1P27658 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
COL8A1P27658 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
COL8A1P27658 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.19
COL8A1P27658 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.19
COL8A1P27658 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC13.83□□□□□ -0.19
COL8A1P27658 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
COL8A1P27658 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
COL8A1P27658 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.19
COL8A1P27658 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
COL8A1P27658 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
COL8A1P27658 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
COL8A1P27658 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC13.83□□□□□ -0.2
COL8A1P27658 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL8A1P27658 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL8A1P27658 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC13.83□□□□□ -0.2
COL8A1P27658 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL8A1P27658 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
COL8A1P27658 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
COL8A1P27658 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
COL8A1P27658 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
COL8A1P27658 PKIG-203ENST00000372887 769 ntTSL 3 BASIC13.83□□□□□ -0.2
COL8A1P27658 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
COL8A1P27658 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL8A1P27658 MPV17-204ENST00000399052 749 ntTSL 4 BASIC13.83□□□□□ -0.2
COL8A1P27658 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC13.83□□□□□ -0.2
COL8A1P27658 AL355334.1-201ENST00000417713 215 ntBASIC13.83□□□□□ -0.2
COL8A1P27658 CNN2P8-201ENST00000421872 913 ntBASIC13.83□□□□□ -0.2
COL8A1P27658 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL8A1P27658 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
COL8A1P27658 FXR1-221ENST00000491674 365 ntTSL 2 BASIC13.83□□□□□ -0.2
COL8A1P27658 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC13.83□□□□□ -0.2
COL8A1P27658 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC13.83□□□□□ -0.2
COL8A1P27658 AC245884.6-201ENST00000515672 1067 ntBASIC13.83□□□□□ -0.2
COL8A1P27658 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC13.83□□□□□ -0.2
COL8A1P27658 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC13.83□□□□□ -0.2
COL8A1P27658 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC13.83□□□□□ -0.2
COL8A1P27658 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC13.83□□□□□ -0.2
COL8A1P27658 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC13.83□□□□□ -0.2
COL8A1P27658 AL355338.1-201ENST00000612598 913 ntTSL 2 BASIC13.83□□□□□ -0.2
COL8A1P27658 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC13.83□□□□□ -0.2
COL8A1P27658 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC13.83□□□□□ -0.2
COL8A1P27658 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL8A1P27658 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL8A1P27658 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL8A1P27658 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL8A1P27658 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL8A1P27658 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
COL8A1P27658 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
COL8A1P27658 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC13.83□□□□□ -0.2
COL8A1P27658 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL8A1P27658 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
COL8A1P27658 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC13.83□□□□□ -0.2
COL8A1P27658 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC13.83□□□□□ -0.2
COL8A1P27658 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL8A1P27658 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC13.83□□□□□ -0.2
COL8A1P27658 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
COL8A1P27658 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL8A1P27658 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL8A1P27658 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL8A1P27658 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL8A1P27658 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL8A1P27658 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL8A1P27658 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
COL8A1P27658 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
COL8A1P27658 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC13.82□□□□□ -0.2
COL8A1P27658 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL8A1P27658 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL8A1P27658 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
COL8A1P27658 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms