Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.33■□□□□ 0.2
TOP3BO95985 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
TOP3BO95985 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TOP3BO95985 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TOP3BO95985 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.33■□□□□ 0.2
TOP3BO95985 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TOP3BO95985 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
TOP3BO95985 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC16.33■□□□□ 0.2
TOP3BO95985 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TOP3BO95985 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TOP3BO95985 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TOP3BO95985 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC16.33■□□□□ 0.2
TOP3BO95985 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC16.33■□□□□ 0.2
TOP3BO95985 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TOP3BO95985 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TOP3BO95985 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TOP3BO95985 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TOP3BO95985 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.32■□□□□ 0.2
TOP3BO95985 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TOP3BO95985 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TOP3BO95985 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
TOP3BO95985 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TOP3BO95985 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
TOP3BO95985 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TOP3BO95985 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TOP3BO95985 MXI1-205ENST00000393134 889 ntTSL 2 BASIC16.32■□□□□ 0.2
TOP3BO95985 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16.32■□□□□ 0.2
TOP3BO95985 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TOP3BO95985 AC079776.1-201ENST00000401540 1152 ntBASIC16.32■□□□□ 0.2
TOP3BO95985 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
TOP3BO95985 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
TOP3BO95985 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.32■□□□□ 0.2
TOP3BO95985 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TOP3BO95985 MST1L-201ENST00000442552 2185 ntBASIC16.32■□□□□ 0.2
TOP3BO95985 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC16.32■□□□□ 0.2
TOP3BO95985 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TOP3BO95985 ACA64.2-201ENST00000459014 129 ntBASIC16.32■□□□□ 0.2
TOP3BO95985 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC16.32■□□□□ 0.2
TOP3BO95985 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.32■□□□□ 0.2
TOP3BO95985 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC16.32■□□□□ 0.2
TOP3BO95985 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
TOP3BO95985 THTPA-204ENST00000554970 569 ntTSL 4 BASIC16.32■□□□□ 0.2
TOP3BO95985 THTPA-206ENST00000556015 535 ntTSL 3 BASIC16.32■□□□□ 0.2
TOP3BO95985 KRT8P23-201ENST00000560090 1207 ntBASIC16.32■□□□□ 0.2
TOP3BO95985 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC16.32■□□□□ 0.2
TOP3BO95985 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.32■□□□□ 0.2
TOP3BO95985 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
TOP3BO95985 AC073592.8-201ENST00000624126 511 ntBASIC16.32■□□□□ 0.2
TOP3BO95985 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
TOP3BO95985 AC084121.4-201ENST00000641598 221 ntBASIC16.32■□□□□ 0.2
TOP3BO95985 AF228730.8-201ENST00000642140 221 ntBASIC16.32■□□□□ 0.2
TOP3BO95985 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TOP3BO95985 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
TOP3BO95985 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC16.32■□□□□ 0.2
TOP3BO95985 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.31■□□□□ 0.2
TOP3BO95985 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
TOP3BO95985 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TOP3BO95985 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC16.31■□□□□ 0.2
TOP3BO95985 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TOP3BO95985 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TOP3BO95985 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC16.31■□□□□ 0.2
TOP3BO95985 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TOP3BO95985 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TOP3BO95985 NID2-208ENST00000617139 3827 ntTSL 5 BASIC16.31■□□□□ 0.2
TOP3BO95985 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TOP3BO95985 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TOP3BO95985 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
TOP3BO95985 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16.31■□□□□ 0.2
TOP3BO95985 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC16.31■□□□□ 0.2
TOP3BO95985 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
TOP3BO95985 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TOP3BO95985 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC16.31■□□□□ 0.2
TOP3BO95985 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC16.31■□□□□ 0.2
TOP3BO95985 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TOP3BO95985 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
TOP3BO95985 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
TOP3BO95985 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TOP3BO95985 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TOP3BO95985 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TOP3BO95985 MIR658-201ENST00000385210 100 ntBASIC16.31■□□□□ 0.2
TOP3BO95985 INE1-201ENST00000456273 945 ntBASIC16.31■□□□□ 0.2
TOP3BO95985 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC16.31■□□□□ 0.2
TOP3BO95985 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TOP3BO95985 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC16.31■□□□□ 0.2
TOP3BO95985 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC16.31■□□□□ 0.2
TOP3BO95985 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC16.31■□□□□ 0.2
TOP3BO95985 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
TOP3BO95985 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
TOP3BO95985 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC16.31■□□□□ 0.2
TOP3BO95985 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TOP3BO95985 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TOP3BO95985 COQ4-205ENST00000609948 956 ntTSL 2 BASIC16.31■□□□□ 0.2
TOP3BO95985 AP001350.2-201ENST00000625104 1094 ntBASIC16.31■□□□□ 0.2
TOP3BO95985 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
TOP3BO95985 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
TOP3BO95985 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TOP3BO95985 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
TOP3BO95985 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.31■□□□□ 0.2
TOP3BO95985 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.31■□□□□ 0.2
TOP3BO95985 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 80.6 ms