Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 ZNF268-216ENST00000588312 559 ntTSL 1 (best)10.99□□□□□ -0.656e-6■■■■■ 103.4
SF3B1O75533 AKT2-242ENST00000601166 554 ntTSL 510.98□□□□□ -0.656e-6■■■■■ 103.4
SF3B1O75533 CDC16-208ENST00000484907 1038 ntTSL 310.95□□□□□ -0.661e-8■■■■■ 103.4
SF3B1O75533 EXOSC7-208ENST00000482004 559 ntTSL 410.94□□□□□ -0.661e-6■■■■■ 103.4
SF3B1O75533 MTA2-205ENST00000531179 625 ntTSL 310.92□□□□□ -0.661e-8■■■■■ 103.4
SF3B1O75533 ZNF519-208ENST00000591393 1111 ntTSL 510.9□□□□□ -0.661e-8■■■■■ 103.4
SF3B1O75533 ATXN10-204ENST00000435026 653 ntTSL 310.88□□□□□ -0.676e-6■■■■■ 103.4
SF3B1O75533 PLEKHH1-206ENST00000558386 3383 ntTSL 210.85□□□□□ -0.671e-8■■■■■ 103.4
SF3B1O75533 PLXNA3-202ENST00000467463 384 ntTSL 310.84□□□□□ -0.676e-6■■■■■ 103.4
SF3B1O75533 GRK2-213ENST00000533077 3453 ntTSL 210.82□□□□□ -0.681e-6■■■■■ 103.4
SF3B1O75533 OGFR-203ENST00000450048 553 ntTSL 310.82□□□□□ -0.681e-8■■■■■ 103.4
SF3B1O75533 RIC8A-211ENST00000529275 440 ntTSL 210.8□□□□□ -0.681e-8■■■■■ 103.4
SF3B1O75533 LARP4-204ENST00000429001 4000 ntTSL 5 BASIC10.8□□□□□ -0.683e-6■■■■■ 103.4
SF3B1O75533 INTS3-210ENST00000512605 3442 ntTSL 2 BASIC10.76□□□□□ -0.692e-6■■■■■ 103.4
SF3B1O75533 TRIQK-220ENST00000524037 865 ntTSL 2 BASIC10.73□□□□□ -0.696e-6■■■■■ 103.4
SF3B1O75533 COA1-205ENST00000415798 524 ntAPPRIS ALT2 TSL 410.73□□□□□ -0.691e-8■■■■■ 103.4
SF3B1O75533 RASSF5-207ENST00000605120 560 ntTSL 210.72□□□□□ -0.696e-6■■■■■ 103.4
SF3B1O75533 RMDN3-209ENST00000560588 2202 ntTSL 210.72□□□□□ -0.691e-8■■■■■ 103.4
SF3B1O75533 CAPZA2-201ENST00000361183 5182 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.76e-6■■■■■ 103.4
SF3B1O75533 IFT20-213ENST00000583796 1485 nt10.66□□□□□ -0.76e-6■■■■■ 103.4
SF3B1O75533 TMEM120A-211ENST00000485200 590 ntTSL 310.65□□□□□ -0.76e-6■■■■■ 103.4
SF3B1O75533 ARMC8-211ENST00000469860 774 ntTSL 510.61□□□□□ -0.716e-6■■■■■ 103.4
SF3B1O75533 CLSTN1-203ENST00000435891 3829 ntTSL 210.61□□□□□ -0.716e-6■■■■■ 103.4
SF3B1O75533 CHORDC1-202ENST00000457199 2003 ntTSL 1 (best) BASIC10.59□□□□□ -0.711e-10■■■■■ 103.4
SF3B1O75533 GTF2H3-214ENST00000618160 3252 ntTSL 5 BASIC10.57□□□□□ -0.721e-8■■■■■ 103.4
SF3B1O75533 KIF13B-201ENST00000521515 2765 ntTSL 5 BASIC10.57□□□□□ -0.726e-6■■■■■ 103.4
SF3B1O75533 SP100-201ENST00000264052 3882 ntTSL 1 (best) BASIC10.56□□□□□ -0.726e-6■■■■■ 103.4
SF3B1O75533 ZNF268-218ENST00000592241 686 ntTSL 1 (best) BASIC10.55□□□□□ -0.726e-6■■■■■ 103.4
SF3B1O75533 MPDU1-212ENST00000574558 900 ntTSL 310.54□□□□□ -0.721e-8■■■■■ 103.4
SF3B1O75533 HERC3-204ENST00000422770 579 ntTSL 410.53□□□□□ -0.721e-8■■■■■ 103.4
SF3B1O75533 MPDU1-204ENST00000423172 888 ntTSL 2 BASIC10.52□□□□□ -0.731e-8■■■■■ 103.4
SF3B1O75533 FBXL2-211ENST00000463736 1643 ntTSL 210.51□□□□□ -0.736e-6■■■■■ 103.4
SF3B1O75533 THOC5-201ENST00000358079 2427 ntTSL 510.5□□□□□ -0.736e-6■■■■■ 103.4
SF3B1O75533 ORC2-201ENST00000234296 4312 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.736e-6■■■■■ 103.4
SF3B1O75533 FAM172A-201ENST00000395965 4312 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.736e-6■■■■■ 103.4
SF3B1O75533 CHSY1-202ENST00000543813 1949 ntTSL 210.48□□□□□ -0.736e-6■■■■■ 103.4
SF3B1O75533 TACC1-204ENST00000518415 3011 ntTSL 1 (best) BASIC10.48□□□□□ -0.731e-8■■■■■ 103.4
SF3B1O75533 SHPRH-206ENST00000438092 6994 ntTSL 1 (best) BASIC10.48□□□□□ -0.736e-6■■■■■ 103.4
SF3B1O75533 FAM172A-202ENST00000502503 1392 ntTSL 210.47□□□□□ -0.736e-6■■■■■ 103.4
SF3B1O75533 ARHGEF3-202ENST00000338458 3639 ntTSL 1 (best) BASIC10.39□□□□□ -0.751e-8■■■■■ 103.4
SF3B1O75533 AGK-203ENST00000473247 1550 ntTSL 5 BASIC10.37□□□□□ -0.751e-8■■■■■ 103.4
SF3B1O75533 TRIQK-222ENST00000524260 1873 ntTSL 1 (best)10.36□□□□□ -0.756e-6■■■■■ 103.4
SF3B1O75533 WDR82-204ENST00000487402 4333 ntTSL 210.35□□□□□ -0.756e-6■■■■■ 103.4
SF3B1O75533 EXT2-203ENST00000395673 3454 ntTSL 1 (best) BASIC10.35□□□□□ -0.753e-6■■■■■ 103.4
SF3B1O75533 SP100-202ENST00000340126 2926 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.766e-6■■■■■ 103.4
SF3B1O75533 ETFDH-203ENST00000506422 865 ntTSL 1 (best)10.29□□□□□ -0.766e-6■■■■■ 103.4
SF3B1O75533 FBXL2-216ENST00000484457 3847 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.766e-6■■■■■ 103.4
SF3B1O75533 AL450384.2-201ENST00000425669 1028 ntTSL 1 (best) BASIC10.25□□□□□ -0.774e-6■■■■■ 103.4
SF3B1O75533 ATE1-205ENST00000455628 697 ntTSL 210.25□□□□□ -0.776e-6■■■■■ 103.4
SF3B1O75533 DLG5-202ENST00000424842 4292 ntTSL 1 (best)10.23□□□□□ -0.776e-6■■■■■ 103.4
SF3B1O75533 CTNNB1-208ENST00000441708 608 ntTSL 410.17□□□□□ -0.786e-6■■■■■ 103.4
SF3B1O75533 ANXA7-202ENST00000372921 2452 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.782e-6■■■■■ 103.4
SF3B1O75533 AFMID-214ENST00000591952 582 ntTSL 2 BASIC10.15□□□□□ -0.786e-6■■■■■ 103.4
SF3B1O75533 TNS1-209ENST00000446688 4292 ntTSL 1 (best) BASIC10.11□□□□□ -0.791e-8■■■■■ 103.4
SF3B1O75533 CREB3L2-201ENST00000330387 7412 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.796e-6■■■■■ 103.4
SF3B1O75533 EFCAB2-211ENST00000487845 1389 ntTSL 210.09□□□□□ -0.796e-6■■■■■ 103.4
SF3B1O75533 CREB3L1-202ENST00000530518 528 ntTSL 210.06□□□□□ -0.81e-8■■■■■ 103.4
SF3B1O75533 STRIP1-204ENST00000473429 4870 ntTSL 210.05□□□□□ -0.81e-6■■■■■ 103.4
SF3B1O75533 REXO5-211ENST00000566518 993 ntTSL 510.05□□□□□ -0.81e-8■■■■■ 103.4
SF3B1O75533 NKIRAS2-203ENST00000393879 4213 ntTSL 1 (best)10.02□□□□□ -0.811e-8■■■■■ 103.4
SF3B1O75533 HDAC6-232ENST00000489053 539 ntTSL 410.02□□□□□ -0.811e-8■■■■■ 103.4
SF3B1O75533 ORC2-205ENST00000467605 568 ntTSL 310.01□□□□□ -0.816e-6■■■■■ 103.4
SF3B1O75533 INTS3-203ENST00000368670 3047 ntTSL 29.97□□□□□ -0.812e-6■■■■■ 103.4
SF3B1O75533 SP100-206ENST00000409897 2037 ntTSL 2 BASIC9.95□□□□□ -0.826e-6■■■■■ 103.4
SF3B1O75533 ACOT9-204ENST00000379303 3117 ntAPPRIS ALT2 TSL 1 (best) BASIC9.93□□□□□ -0.826e-6■■■■■ 103.4
SF3B1O75533 POLR2D-201ENST00000272645 5042 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.821e-8■■■■■ 103.4
SF3B1O75533 TBC1D20-202ENST00000461188 5195 ntTSL 29.86□□□□□ -0.831e-8■■■■■ 103.4
SF3B1O75533 CAPZA2-211ENST00000484325 324 ntTSL 1 (best)9.85□□□□□ -0.836e-6■■■■■ 103.4
SF3B1O75533 ZNF519-211ENST00000592345 772 ntTSL 39.83□□□□□ -0.841e-8■■■■■ 103.4
SF3B1O75533 FTX-201ENST00000418855 579 ntTSL 29.82□□□□□ -0.841e-8■■■■■ 103.4
SF3B1O75533 EYA3-207ENST00000495923 833 ntTSL 59.82□□□□□ -0.846e-6■■■■■ 103.4
SF3B1O75533 FBXL2-222ENST00000538892 2793 ntTSL 5 BASIC9.81□□□□□ -0.846e-6■■■■■ 103.4
SF3B1O75533 PPP3CA-205ENST00000507176 1958 ntTSL 1 (best) BASIC9.76□□□□□ -0.856e-6■■■■■ 103.4
SF3B1O75533 FBXL2-220ENST00000498807 558 ntTSL 49.75□□□□□ -0.856e-6■■■■■ 103.4
SF3B1O75533 FBXL2-202ENST00000421391 1581 ntTSL 29.73□□□□□ -0.856e-6■■■■■ 103.4
SF3B1O75533 PSMD9-211ENST00000544724 3051 ntTSL 29.72□□□□□ -0.852e-12■■■■■ 103.4
SF3B1O75533 QKI-210ENST00000537883 1106 ntTSL 39.7□□□□□ -0.865e-6■■■■■ 103.4
SF3B1O75533 EFCAB2-207ENST00000447569 527 ntTSL 2 BASIC9.7□□□□□ -0.866e-6■■■■■ 103.4
SF3B1O75533 CREB3L2-207ENST00000616381 7133 ntTSL 5 BASIC9.66□□□□□ -0.866e-6■■■■■ 103.4
SF3B1O75533 TACC1-226ENST00000523239 519 ntTSL 59.65□□□□□ -0.861e-8■■■■■ 103.4
SF3B1O75533 TNS1-201ENST00000171887 10331 ntAPPRIS P3 TSL 1 (best) BASIC9.65□□□□□ -0.861e-8■■■■■ 103.4
SF3B1O75533 RNF157-205ENST00000591355 559 ntTSL 49.6□□□□□ -0.871e-8■■■■■ 103.4
SF3B1O75533 AC009120.2-203ENST00000565313 539 ntTSL 3 BASIC9.55□□□□□ -0.886e-6■■■■■ 103.4
SF3B1O75533 SMARCAL1-202ENST00000358207 3056 ntAPPRIS P2 TSL 1 (best) BASIC9.52□□□□□ -0.891e-8■■■■■ 103.4
SF3B1O75533 S100PBP-214ENST00000530710 725 ntTSL 49.48□□□□□ -0.896e-6■■■■■ 103.4
SF3B1O75533 MAU2-213ENST00000590882 553 ntTSL 49.46□□□□□ -0.91e-8■■■■■ 103.4
SF3B1O75533 PNP-207ENST00000556754 2573 ntTSL 29.38□□□□□ -0.911e-8■■■■■ 103.4
SF3B1O75533 ATP5G2-206ENST00000550241 406 ntTSL 39.35□□□□□ -0.916e-6■■■■■ 103.4
SF3B1O75533 BTF3-201ENST00000335895 897 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.922e-6■■■■■ 103.4
SF3B1O75533 TOE1-202ENST00000460057 592 ntTSL 39.32□□□□□ -0.926e-6■■■■■ 103.4
SF3B1O75533 FAT1-201ENST00000441802 14786 ntAPPRIS P2 TSL 5 BASIC9.32□□□□□ -0.926e-6■■■■■ 103.4
SF3B1O75533 GTF2H3-211ENST00000543154 582 ntTSL 29.29□□□□□ -0.921e-8■■■■■ 103.4
SF3B1O75533 POLR2D-203ENST00000409955 1758 ntTSL 2 BASIC9.28□□□□□ -0.921e-8■■■■■ 103.4
SF3B1O75533 BICD1-202ENST00000395758 3194 ntTSL 1 (best)9.27□□□□□ -0.931e-8■■■■■ 103.4
SF3B1O75533 PPP3CA-206ENST00000510292 581 ntTSL 39.25□□□□□ -0.936e-6■■■■■ 103.4
SF3B1O75533 COG2-201ENST00000366668 2843 ntAPPRIS ALT1 TSL 1 (best) BASIC9.24□□□□□ -0.936e-6■■■■■ 103.4
SF3B1O75533 TM9SF4-207ENST00000495749 3023 ntTSL 29.23□□□□□ -0.931e-8■■■■■ 103.4
SF3B1O75533 AC004224.2-201ENST00000574423 529 ntTSL 5 BASIC9.22□□□□□ -0.936e-6■■■■■ 103.4
SF3B1O75533 INTS3-209ENST00000503133 1896 ntTSL 29.21□□□□□ -0.932e-6■■■■■ 103.4
SF3B1O75533 ASB16-AS1-203ENST00000591166 754 ntTSL 39.21□□□□□ -0.941e-8■■■■■ 103.4
Retrieved 100 of 46,956 protein–RNA pairs in 1482.1 ms