Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SHOX2O60902 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SHOX2O60902 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC15.92■□□□□ 0.14
SHOX2O60902 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
SHOX2O60902 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC15.92■□□□□ 0.14
SHOX2O60902 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SHOX2O60902 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC15.92■□□□□ 0.14
SHOX2O60902 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SHOX2O60902 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
SHOX2O60902 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
SHOX2O60902 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC15.91■□□□□ 0.14
SHOX2O60902 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
SHOX2O60902 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SHOX2O60902 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC15.91■□□□□ 0.14
SHOX2O60902 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
SHOX2O60902 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC15.91■□□□□ 0.14
SHOX2O60902 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SHOX2O60902 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC15.91■□□□□ 0.14
SHOX2O60902 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
SHOX2O60902 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
SHOX2O60902 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SHOX2O60902 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SHOX2O60902 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC15.91■□□□□ 0.14
SHOX2O60902 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
SHOX2O60902 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SHOX2O60902 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC15.91■□□□□ 0.14
SHOX2O60902 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SHOX2O60902 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SHOX2O60902 DUX4L26-201ENST00000489078 1255 ntBASIC15.91■□□□□ 0.14
SHOX2O60902 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC15.91■□□□□ 0.14
SHOX2O60902 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC15.91■□□□□ 0.14
SHOX2O60902 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC15.91■□□□□ 0.14
SHOX2O60902 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC15.91■□□□□ 0.14
SHOX2O60902 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC15.91■□□□□ 0.14
SHOX2O60902 AL365330.1-201ENST00000607459 531 ntBASIC15.91■□□□□ 0.14
SHOX2O60902 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC15.91■□□□□ 0.14
SHOX2O60902 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC15.91■□□□□ 0.14
SHOX2O60902 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC15.91■□□□□ 0.14
SHOX2O60902 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
SHOX2O60902 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
SHOX2O60902 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
SHOX2O60902 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC15.91■□□□□ 0.14
SHOX2O60902 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC15.91■□□□□ 0.14
SHOX2O60902 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SHOX2O60902 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC15.91■□□□□ 0.14
SHOX2O60902 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC15.91■□□□□ 0.14
SHOX2O60902 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC15.91■□□□□ 0.14
SHOX2O60902 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC15.9■□□□□ 0.14
SHOX2O60902 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
SHOX2O60902 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SHOX2O60902 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SHOX2O60902 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SHOX2O60902 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SHOX2O60902 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SHOX2O60902 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SHOX2O60902 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC15.9■□□□□ 0.14
SHOX2O60902 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC15.9■□□□□ 0.14
SHOX2O60902 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SHOX2O60902 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
SHOX2O60902 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.9■□□□□ 0.14
SHOX2O60902 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SHOX2O60902 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SHOX2O60902 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SHOX2O60902 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SHOX2O60902 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SHOX2O60902 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
SHOX2O60902 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC15.9■□□□□ 0.14
SHOX2O60902 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC15.9■□□□□ 0.14
SHOX2O60902 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC15.9■□□□□ 0.14
SHOX2O60902 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC15.9■□□□□ 0.14
SHOX2O60902 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC15.9■□□□□ 0.14
SHOX2O60902 AC090616.6-201ENST00000582640 721 ntBASIC15.9■□□□□ 0.14
SHOX2O60902 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC15.9■□□□□ 0.14
SHOX2O60902 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC15.9■□□□□ 0.14
SHOX2O60902 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SHOX2O60902 WT1-AS_2.1-201ENST00000613208 137 ntBASIC15.9■□□□□ 0.14
SHOX2O60902 BSG-214ENST00000614867 960 ntTSL 3 BASIC15.9■□□□□ 0.14
SHOX2O60902 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC15.9■□□□□ 0.14
SHOX2O60902 AF228730.7-201ENST00000641842 219 ntBASIC15.9■□□□□ 0.14
SHOX2O60902 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
SHOX2O60902 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SHOX2O60902 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
SHOX2O60902 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
SHOX2O60902 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SHOX2O60902 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SHOX2O60902 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC15.9■□□□□ 0.14
SHOX2O60902 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SHOX2O60902 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SHOX2O60902 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SHOX2O60902 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
SHOX2O60902 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.14
SHOX2O60902 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHOX2O60902 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHOX2O60902 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
SHOX2O60902 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC15.89■□□□□ 0.13
SHOX2O60902 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHOX2O60902 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHOX2O60902 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SHOX2O60902 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC15.89■□□□□ 0.13
SHOX2O60902 AC018892.3-201ENST00000623986 2499 ntBASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms