Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 VWDE-206ENST00000614403 4701 ntTSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 ACVR2B-201ENST00000352511 11821 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 LVRN-202ENST00000395528 4544 ntTSL 5 BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 TMEM170A-201ENST00000357613 4959 ntTSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 AC079776.2-201ENST00000641154 1609 ntBASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 ARF3-201ENST00000256682 4105 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 TRIM80P-201ENST00000455685 2848 ntBASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 IKZF4-201ENST00000262032 5229 ntAPPRIS P1 TSL 5 BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 CDC45-205ENST00000437685 2072 ntTSL 2 BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 DLX1-203ENST00000361725 2640 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 AGPAT4-203ENST00000366911 7705 ntTSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 TUBB8P12-201ENST00000308911 1335 ntBASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 TUBB7P-202ENST00000428444 1305 ntBASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 TUBB8P7-204ENST00000567960 1332 ntBASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 SPATA6-203ENST00000371847 4973 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 MSH2-201ENST00000233146 3307 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 GDPD5-209ENST00000529721 3222 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 FAM118A-201ENST00000216214 3458 ntAPPRIS P1 TSL 2 BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 CUL7-201ENST00000265348 5254 ntAPPRIS P3 TSL 1 (best) BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 CTDP1-202ENST00000299543 3380 ntAPPRIS ALT2 TSL 5 BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 LPCAT1-201ENST00000283415 3966 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 SELPLG-203ENST00000550948 2256 ntAPPRIS P3 TSL 1 (best) BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 AC013726.1-201ENST00000563747 2285 ntBASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 AC002310.6-201ENST00000624451 1377 ntBASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 ZNF200-205ENST00000431561 3348 ntAPPRIS P3 TSL 1 (best) BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 ZNF473-205ENST00000595661 4828 ntAPPRIS P3 TSL 5 BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 GNG12-AS1-201ENST00000413628 2058 ntTSL 2 BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 ARID4A-206ENST00000431317 5783 ntTSL 5 BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 AK1-201ENST00000223836 736 ntTSL 3 BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 AL355355.2-201ENST00000442321 338 ntBASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 AL356441.2-201ENST00000443009 864 ntBASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 GXYLT1P5-201ENST00000614548 1189 ntBASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 AC131212.4-201ENST00000623606 975 ntBASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 AMT-204ENST00000427987 1646 ntTSL 5 BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 PAX8-203ENST00000348715 3966 ntTSL 1 (best) BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 NOX5-202ENST00000388866 2804 ntTSL 1 (best) BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 TKT-203ENST00000423525 2831 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 TOMM40L-209ENST00000545897 2807 ntTSL 2 BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 VAX1-201ENST00000277905 4494 ntTSL 1 (best) BASIC8.78□□□□□ -1
CHKB-CPT1BH3BT56 AJ011931.1-201ENST00000618749 2492 ntBASIC8.78□□□□□ -1
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms