Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 RPS2P28-201ENST00000314255 741 ntBASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 RNPS1P1-201ENST00000507437 918 ntBASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 MOK-208ENST00000519058 917 ntTSL 2 BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 CLEC4GP1-201ENST00000596555 870 ntBASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 AC008735.5-201ENST00000623544 497 ntBASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 AL592424.1-201ENST00000563624 1536 ntBASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 ADAMTS7P1-201ENST00000613213 4793 ntBASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 CICP13-201ENST00000422015 2789 ntBASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 AF186996.4-201ENST00000467186 377 ntBASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 MMP17-203ENST00000535004 719 ntTSL 3 BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 RIN3-211ENST00000557762 517 ntTSL 3 BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 MIR4751-201ENST00000578027 74 ntBASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 AC004790.2-201ENST00000623588 572 ntBASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 AC069224.1-201ENST00000566372 1715 ntBASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CHMP1AQ9HD42 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC13.77□□□□□ -0.2
CHMP1AQ9HD42 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
CHMP1AQ9HD42 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
CHMP1AQ9HD42 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms