Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
ABCA3Q99758 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
ABCA3Q99758 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ABCA3Q99758 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
ABCA3Q99758 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ABCA3Q99758 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
ABCA3Q99758 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
ABCA3Q99758 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ABCA3Q99758 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ABCA3Q99758 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
ABCA3Q99758 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ABCA3Q99758 RBM38-204ENST00000371219 760 ntTSL 2 BASIC20.56■□□□□ 0.88
ABCA3Q99758 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ABCA3Q99758 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC20.56■□□□□ 0.88
ABCA3Q99758 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC20.56■□□□□ 0.88
ABCA3Q99758 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC20.56■□□□□ 0.88
ABCA3Q99758 AC132192.2-201ENST00000596206 1147 ntBASIC20.56■□□□□ 0.88
ABCA3Q99758 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC20.56■□□□□ 0.88
ABCA3Q99758 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
ABCA3Q99758 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ABCA3Q99758 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ABCA3Q99758 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
ABCA3Q99758 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC20.55■□□□□ 0.88
ABCA3Q99758 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ABCA3Q99758 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC20.55■□□□□ 0.88
ABCA3Q99758 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ABCA3Q99758 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC20.55■□□□□ 0.88
ABCA3Q99758 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ABCA3Q99758 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
ABCA3Q99758 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ABCA3Q99758 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ABCA3Q99758 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC20.55■□□□□ 0.88
ABCA3Q99758 RTN3P1-201ENST00000536295 711 ntBASIC20.55■□□□□ 0.88
ABCA3Q99758 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC20.55■□□□□ 0.88
ABCA3Q99758 AC135983.4-201ENST00000564116 1262 ntBASIC20.55■□□□□ 0.88
ABCA3Q99758 DUX4L47-201ENST00000566374 394 ntBASIC20.55■□□□□ 0.88
ABCA3Q99758 AC012044.1-201ENST00000603431 297 ntBASIC20.55■□□□□ 0.88
ABCA3Q99758 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC20.55■□□□□ 0.88
ABCA3Q99758 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ABCA3Q99758 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ABCA3Q99758 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
ABCA3Q99758 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ABCA3Q99758 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
ABCA3Q99758 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC20.55■□□□□ 0.88
ABCA3Q99758 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ABCA3Q99758 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC20.54■□□□□ 0.88
ABCA3Q99758 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC20.54■□□□□ 0.88
ABCA3Q99758 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC20.54■□□□□ 0.88
ABCA3Q99758 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ABCA3Q99758 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
ABCA3Q99758 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ABCA3Q99758 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ABCA3Q99758 RPS15-201ENST00000233609 534 ntTSL 2 BASIC20.54■□□□□ 0.88
ABCA3Q99758 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC20.54■□□□□ 0.88
ABCA3Q99758 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC20.54■□□□□ 0.88
ABCA3Q99758 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC20.54■□□□□ 0.88
ABCA3Q99758 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC20.54■□□□□ 0.88
ABCA3Q99758 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC20.54■□□□□ 0.88
ABCA3Q99758 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
ABCA3Q99758 RPS15-205ENST00000586686 562 ntTSL 5 BASIC20.54■□□□□ 0.88
ABCA3Q99758 RPS15-208ENST00000591804 711 ntTSL 5 BASIC20.54■□□□□ 0.88
ABCA3Q99758 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
ABCA3Q99758 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC20.54■□□□□ 0.88
ABCA3Q99758 AC138894.2-201ENST00000602838 371 ntBASIC20.54■□□□□ 0.88
ABCA3Q99758 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
ABCA3Q99758 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ABCA3Q99758 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC20.54■□□□□ 0.88
ABCA3Q99758 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC20.54■□□□□ 0.88
ABCA3Q99758 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
ABCA3Q99758 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC20.54■□□□□ 0.88
ABCA3Q99758 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
ABCA3Q99758 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ABCA3Q99758 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ABCA3Q99758 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
ABCA3Q99758 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ABCA3Q99758 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ABCA3Q99758 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ABCA3Q99758 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
ABCA3Q99758 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC20.53■□□□□ 0.88
ABCA3Q99758 PFN2-205ENST00000461868 613 ntTSL 2 BASIC20.53■□□□□ 0.88
ABCA3Q99758 IGHV3-37-201ENST00000518544 340 ntBASIC20.53■□□□□ 0.88
ABCA3Q99758 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC20.53■□□□□ 0.88
ABCA3Q99758 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC20.53■□□□□ 0.88
ABCA3Q99758 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC20.53■□□□□ 0.88
ABCA3Q99758 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ABCA3Q99758 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ABCA3Q99758 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC20.53■□□□□ 0.88
ABCA3Q99758 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC20.53■□□□□ 0.88
ABCA3Q99758 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
ABCA3Q99758 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ABCA3Q99758 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ABCA3Q99758 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ABCA3Q99758 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ABCA3Q99758 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ABCA3Q99758 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
ABCA3Q99758 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
ABCA3Q99758 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC20.53■□□□□ 0.88
ABCA3Q99758 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ABCA3Q99758 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC20.53■□□□□ 0.88
ABCA3Q99758 STUB1-204ENST00000564370 875 ntTSL 2 BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms