Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 USP40-206ENST00000443711 628 ntTSL 2 BASIC13.6□□□□□ -0.23
COL12A1Q99715 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC13.6□□□□□ -0.23
COL12A1Q99715 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL12A1Q99715 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL12A1Q99715 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC13.6□□□□□ -0.23
COL12A1Q99715 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL12A1Q99715 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL12A1Q99715 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC13.6□□□□□ -0.23
COL12A1Q99715 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL12A1Q99715 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC13.6□□□□□ -0.23
COL12A1Q99715 BNIP3P1-202ENST00000550043 1585 ntBASIC13.6□□□□□ -0.23
COL12A1Q99715 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL12A1Q99715 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC13.6□□□□□ -0.23
COL12A1Q99715 HIST2H2BB-201ENST00000449108 381 ntBASIC13.6□□□□□ -0.23
COL12A1Q99715 MIR5196-201ENST00000578146 115 ntBASIC13.6□□□□□ -0.23
COL12A1Q99715 AL353770.1-201ENST00000614915 403 ntBASIC13.6□□□□□ -0.23
COL12A1Q99715 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL12A1Q99715 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
COL12A1Q99715 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL12A1Q99715 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL12A1Q99715 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC13.6□□□□□ -0.23
COL12A1Q99715 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC13.6□□□□□ -0.23
COL12A1Q99715 AC134407.2-201ENST00000625089 1978 ntBASIC13.6□□□□□ -0.23
COL12A1Q99715 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL12A1Q99715 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL12A1Q99715 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL12A1Q99715 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL12A1Q99715 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL12A1Q99715 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC13.6□□□□□ -0.23
COL12A1Q99715 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
COL12A1Q99715 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC13.6□□□□□ -0.23
COL12A1Q99715 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL12A1Q99715 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
COL12A1Q99715 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
COL12A1Q99715 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC13.6□□□□□ -0.23
COL12A1Q99715 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL12A1Q99715 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC13.6□□□□□ -0.23
COL12A1Q99715 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
COL12A1Q99715 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC13.6□□□□□ -0.23
COL12A1Q99715 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC13.6□□□□□ -0.23
COL12A1Q99715 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
COL12A1Q99715 ETV2-208ENST00000621247 941 ntTSL 5 BASIC13.6□□□□□ -0.23
COL12A1Q99715 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL12A1Q99715 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
COL12A1Q99715 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC13.6□□□□□ -0.23
COL12A1Q99715 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
COL12A1Q99715 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC13.59□□□□□ -0.23
COL12A1Q99715 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
COL12A1Q99715 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC13.59□□□□□ -0.23
COL12A1Q99715 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC13.59□□□□□ -0.23
COL12A1Q99715 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC13.59□□□□□ -0.23
COL12A1Q99715 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL12A1Q99715 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
COL12A1Q99715 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC13.59□□□□□ -0.23
COL12A1Q99715 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL12A1Q99715 RTN3P1-201ENST00000536295 711 ntBASIC13.59□□□□□ -0.23
COL12A1Q99715 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC13.59□□□□□ -0.23
COL12A1Q99715 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC13.59□□□□□ -0.23
COL12A1Q99715 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL12A1Q99715 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL12A1Q99715 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL12A1Q99715 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL12A1Q99715 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
COL12A1Q99715 AC074138.1-201ENST00000611182 1303 ntBASIC13.59□□□□□ -0.23
COL12A1Q99715 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL12A1Q99715 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL12A1Q99715 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
COL12A1Q99715 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL12A1Q99715 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC13.59□□□□□ -0.23
COL12A1Q99715 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
COL12A1Q99715 AL357373.1-201ENST00000394974 322 ntBASIC13.59□□□□□ -0.23
COL12A1Q99715 AC245100.5-201ENST00000452108 331 ntBASIC13.59□□□□□ -0.23
COL12A1Q99715 AC104073.2-201ENST00000453737 312 ntBASIC13.59□□□□□ -0.23
COL12A1Q99715 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC13.59□□□□□ -0.23
COL12A1Q99715 AP002803.1-201ENST00000528836 498 ntBASIC13.59□□□□□ -0.23
COL12A1Q99715 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
COL12A1Q99715 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC13.59□□□□□ -0.23
COL12A1Q99715 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC13.59□□□□□ -0.23
COL12A1Q99715 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC13.59□□□□□ -0.23
COL12A1Q99715 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC13.59□□□□□ -0.23
COL12A1Q99715 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL12A1Q99715 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
COL12A1Q99715 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL12A1Q99715 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC13.58□□□□□ -0.23
COL12A1Q99715 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.23
COL12A1Q99715 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC13.58□□□□□ -0.23
COL12A1Q99715 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
COL12A1Q99715 SNX15-201ENST00000352068 771 ntTSL 5 BASIC13.58□□□□□ -0.23
COL12A1Q99715 OARD1-204ENST00000464633 717 ntTSL 2 BASIC13.58□□□□□ -0.23
COL12A1Q99715 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC13.58□□□□□ -0.23
COL12A1Q99715 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC13.58□□□□□ -0.23
COL12A1Q99715 AC243562.2-201ENST00000561247 970 ntBASIC13.58□□□□□ -0.23
COL12A1Q99715 SYT17-208ENST00000568433 812 ntTSL 3 BASIC13.58□□□□□ -0.23
COL12A1Q99715 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC13.58□□□□□ -0.23
COL12A1Q99715 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC13.58□□□□□ -0.23
COL12A1Q99715 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
COL12A1Q99715 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC13.58□□□□□ -0.24
COL12A1Q99715 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL12A1Q99715 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL12A1Q99715 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms