Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.11■□□□□ 0.33
LRCH3Q96II8 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRCH3Q96II8 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRCH3Q96II8 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRCH3Q96II8 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRCH3Q96II8 AL136982.4-201ENST00000437689 1740 ntBASIC17.11■□□□□ 0.33
LRCH3Q96II8 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRCH3Q96II8 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC17.11■□□□□ 0.33
LRCH3Q96II8 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC17.11■□□□□ 0.33
LRCH3Q96II8 VMO1-203ENST00000416307 712 ntTSL 2 BASIC17.11■□□□□ 0.33
LRCH3Q96II8 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LRCH3Q96II8 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LRCH3Q96II8 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LRCH3Q96II8 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC17.11■□□□□ 0.33
LRCH3Q96II8 AC141586.1-203ENST00000567242 366 ntBASIC17.11■□□□□ 0.33
LRCH3Q96II8 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC17.11■□□□□ 0.33
LRCH3Q96II8 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC17.11■□□□□ 0.33
LRCH3Q96II8 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
LRCH3Q96II8 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LRCH3Q96II8 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRCH3Q96II8 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRCH3Q96II8 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.11■□□□□ 0.33
LRCH3Q96II8 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC17.11■□□□□ 0.33
LRCH3Q96II8 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC17.11■□□□□ 0.33
LRCH3Q96II8 FOS-202ENST00000535987 1402 ntTSL 2 BASIC17.11■□□□□ 0.33
LRCH3Q96II8 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRCH3Q96II8 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LRCH3Q96II8 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRCH3Q96II8 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC17.11■□□□□ 0.33
LRCH3Q96II8 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
LRCH3Q96II8 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LRCH3Q96II8 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC17.11■□□□□ 0.33
LRCH3Q96II8 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LRCH3Q96II8 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LRCH3Q96II8 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LRCH3Q96II8 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
LRCH3Q96II8 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
LRCH3Q96II8 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LRCH3Q96II8 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
LRCH3Q96II8 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
LRCH3Q96II8 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
LRCH3Q96II8 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC17.1■□□□□ 0.33
LRCH3Q96II8 LST1-205ENST00000376089 680 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LRCH3Q96II8 LST1-206ENST00000376090 689 ntTSL 2 BASIC17.1■□□□□ 0.33
LRCH3Q96II8 LST1-208ENST00000376093 648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
LRCH3Q96II8 LST1-209ENST00000376096 565 ntTSL 2 BASIC17.1■□□□□ 0.33
LRCH3Q96II8 LST1-210ENST00000376099 610 ntTSL 2 BASIC17.1■□□□□ 0.33
LRCH3Q96II8 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LRCH3Q96II8 LST1-212ENST00000396101 459 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LRCH3Q96II8 LST1-214ENST00000418507 726 ntTSL 2 BASIC17.1■□□□□ 0.33
LRCH3Q96II8 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC17.1■□□□□ 0.33
LRCH3Q96II8 LST1-217ENST00000438075 764 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
LRCH3Q96II8 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LRCH3Q96II8 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
LRCH3Q96II8 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LRCH3Q96II8 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC17.1■□□□□ 0.33
LRCH3Q96II8 AC022137.2-201ENST00000503482 481 ntBASIC17.1■□□□□ 0.33
LRCH3Q96II8 NUP210P1-202ENST00000504322 710 ntBASIC17.1■□□□□ 0.33
LRCH3Q96II8 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC17.1■□□□□ 0.33
LRCH3Q96II8 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC17.1■□□□□ 0.33
LRCH3Q96II8 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC17.1■□□□□ 0.33
LRCH3Q96II8 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC17.1■□□□□ 0.33
LRCH3Q96II8 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LRCH3Q96II8 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
LRCH3Q96II8 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC17.1■□□□□ 0.33
LRCH3Q96II8 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LRCH3Q96II8 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LRCH3Q96II8 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LRCH3Q96II8 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LRCH3Q96II8 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LRCH3Q96II8 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.1■□□□□ 0.33
LRCH3Q96II8 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LRCH3Q96II8 FRMD8P1-201ENST00000440433 1524 ntBASIC17.1■□□□□ 0.33
LRCH3Q96II8 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.1■□□□□ 0.33
LRCH3Q96II8 CYP4F24P-201ENST00000586049 1580 ntBASIC17.1■□□□□ 0.33
LRCH3Q96II8 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
LRCH3Q96II8 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LRCH3Q96II8 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC17.09■□□□□ 0.33
LRCH3Q96II8 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
LRCH3Q96II8 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LRCH3Q96II8 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LRCH3Q96II8 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LRCH3Q96II8 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LRCH3Q96II8 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LRCH3Q96II8 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
LRCH3Q96II8 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LRCH3Q96II8 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LRCH3Q96II8 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LRCH3Q96II8 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
LRCH3Q96II8 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC17.09■□□□□ 0.33
LRCH3Q96II8 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC17.09■□□□□ 0.33
LRCH3Q96II8 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
LRCH3Q96II8 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LRCH3Q96II8 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC17.09■□□□□ 0.33
LRCH3Q96II8 AL596276.2-201ENST00000447525 331 ntBASIC17.09■□□□□ 0.33
LRCH3Q96II8 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC17.09■□□□□ 0.33
LRCH3Q96II8 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC17.09■□□□□ 0.33
LRCH3Q96II8 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
LRCH3Q96II8 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LRCH3Q96II8 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms