Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC11.31□□□□□ -0.6
RPL39P62891 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
RPL39P62891 METTL23-204ENST00000586752 904 ntTSL 2 BASIC11.31□□□□□ -0.6
RPL39P62891 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
RPL39P62891 AL732292.2-201ENST00000609649 430 ntBASIC11.31□□□□□ -0.6
RPL39P62891 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
RPL39P62891 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
RPL39P62891 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
RPL39P62891 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
RPL39P62891 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
RPL39P62891 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
RPL39P62891 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
RPL39P62891 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
RPL39P62891 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC11.31□□□□□ -0.6
RPL39P62891 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
RPL39P62891 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
RPL39P62891 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC11.31□□□□□ -0.6
RPL39P62891 GPI-205ENST00000586425 1799 ntTSL 5 BASIC11.31□□□□□ -0.6
RPL39P62891 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC11.31□□□□□ -0.6
RPL39P62891 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
RPL39P62891 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
RPL39P62891 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
RPL39P62891 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
RPL39P62891 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC11.31□□□□□ -0.6
RPL39P62891 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
RPL39P62891 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
RPL39P62891 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
RPL39P62891 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC11.3□□□□□ -0.6
RPL39P62891 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC11.3□□□□□ -0.6
RPL39P62891 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
RPL39P62891 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
RPL39P62891 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC11.3□□□□□ -0.6
RPL39P62891 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
RPL39P62891 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC11.3□□□□□ -0.6
RPL39P62891 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC11.3□□□□□ -0.6
RPL39P62891 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
RPL39P62891 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC11.3□□□□□ -0.6
RPL39P62891 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
RPL39P62891 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC11.3□□□□□ -0.6
RPL39P62891 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
RPL39P62891 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
RPL39P62891 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
RPL39P62891 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC11.3□□□□□ -0.6
RPL39P62891 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
RPL39P62891 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
RPL39P62891 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC11.3□□□□□ -0.6
RPL39P62891 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
RPL39P62891 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC11.3□□□□□ -0.6
RPL39P62891 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC11.3□□□□□ -0.6
RPL39P62891 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
RPL39P62891 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC11.3□□□□□ -0.6
RPL39P62891 MTRF1LP2-201ENST00000506027 1122 ntBASIC11.3□□□□□ -0.6
RPL39P62891 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC11.3□□□□□ -0.6
RPL39P62891 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC11.3□□□□□ -0.6
RPL39P62891 BCL10-202ENST00000620248 774 ntTSL 5 BASIC11.3□□□□□ -0.6
RPL39P62891 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC11.3□□□□□ -0.6
RPL39P62891 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
RPL39P62891 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
RPL39P62891 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC11.3□□□□□ -0.6
RPL39P62891 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
RPL39P62891 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
RPL39P62891 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
RPL39P62891 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
RPL39P62891 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
RPL39P62891 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
RPL39P62891 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
RPL39P62891 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC11.3□□□□□ -0.6
RPL39P62891 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
RPL39P62891 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
RPL39P62891 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
RPL39P62891 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC11.3□□□□□ -0.6
RPL39P62891 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
RPL39P62891 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC11.3□□□□□ -0.6
RPL39P62891 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
RPL39P62891 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
RPL39P62891 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
RPL39P62891 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC11.29□□□□□ -0.6
RPL39P62891 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
RPL39P62891 IER3-202ENST00000376377 1350 ntBASIC11.29□□□□□ -0.6
RPL39P62891 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
RPL39P62891 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC11.29□□□□□ -0.6
RPL39P62891 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
RPL39P62891 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
RPL39P62891 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
RPL39P62891 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
RPL39P62891 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
RPL39P62891 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC11.29□□□□□ -0.6
RPL39P62891 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC11.29□□□□□ -0.6
RPL39P62891 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
RPL39P62891 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC11.29□□□□□ -0.6
RPL39P62891 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
RPL39P62891 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC11.29□□□□□ -0.6
RPL39P62891 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
RPL39P62891 ILF3-AS1-201ENST00000591501 1983 ntBASIC11.29□□□□□ -0.6
RPL39P62891 AC134407.2-201ENST00000625089 1978 ntBASIC11.29□□□□□ -0.6
RPL39P62891 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
RPL39P62891 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
RPL39P62891 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
RPL39P62891 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
RPL39P62891 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC11.29□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms