Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HDAC4P56524 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC16.63■□□□□ 0.25
HDAC4P56524 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
HDAC4P56524 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
HDAC4P56524 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC16.63■□□□□ 0.25
HDAC4P56524 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
HDAC4P56524 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
HDAC4P56524 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HDAC4P56524 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HDAC4P56524 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
HDAC4P56524 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
HDAC4P56524 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HDAC4P56524 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HDAC4P56524 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HDAC4P56524 WRB-204ENST00000398753 699 ntTSL 3 BASIC16.63■□□□□ 0.25
HDAC4P56524 AZGP1P1-201ENST00000411909 902 ntBASIC16.63■□□□□ 0.25
HDAC4P56524 METTL21AP1-201ENST00000438852 635 ntBASIC16.63■□□□□ 0.25
HDAC4P56524 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
HDAC4P56524 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HDAC4P56524 ELP6-209ENST00000446787 894 ntTSL 3 BASIC16.63■□□□□ 0.25
HDAC4P56524 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HDAC4P56524 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC16.63■□□□□ 0.25
HDAC4P56524 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC16.63■□□□□ 0.25
HDAC4P56524 AL079307.3-201ENST00000556114 283 ntBASIC16.63■□□□□ 0.25
HDAC4P56524 MIR4313-201ENST00000580760 101 ntBASIC16.63■□□□□ 0.25
HDAC4P56524 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC16.63■□□□□ 0.25
HDAC4P56524 LSM12-202ENST00000585388 942 ntTSL 3 BASIC16.63■□□□□ 0.25
HDAC4P56524 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
HDAC4P56524 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC16.63■□□□□ 0.25
HDAC4P56524 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.63■□□□□ 0.25
HDAC4P56524 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC16.63■□□□□ 0.25
HDAC4P56524 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.63■□□□□ 0.25
HDAC4P56524 TUBB3P1-201ENST00000405796 1332 ntBASIC16.63■□□□□ 0.25
HDAC4P56524 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HDAC4P56524 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HDAC4P56524 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC16.63■□□□□ 0.25
HDAC4P56524 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HDAC4P56524 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16.63■□□□□ 0.25
HDAC4P56524 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC16.63■□□□□ 0.25
HDAC4P56524 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
HDAC4P56524 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HDAC4P56524 KRT8P12-202ENST00000472924 1397 ntBASIC16.63■□□□□ 0.25
HDAC4P56524 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HDAC4P56524 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
HDAC4P56524 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
HDAC4P56524 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.62■□□□□ 0.25
HDAC4P56524 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HDAC4P56524 CICP13-201ENST00000422015 2789 ntBASIC16.62■□□□□ 0.25
HDAC4P56524 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HDAC4P56524 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC16.62■□□□□ 0.25
HDAC4P56524 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HDAC4P56524 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
HDAC4P56524 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HDAC4P56524 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HDAC4P56524 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HDAC4P56524 AL080243.2-201ENST00000418783 582 ntBASIC16.62■□□□□ 0.25
HDAC4P56524 PHKG1P2-201ENST00000457537 863 ntBASIC16.62■□□□□ 0.25
HDAC4P56524 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC16.62■□□□□ 0.25
HDAC4P56524 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HDAC4P56524 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC16.62■□□□□ 0.25
HDAC4P56524 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC16.62■□□□□ 0.25
HDAC4P56524 AL450472.2-201ENST00000603663 1156 ntBASIC16.62■□□□□ 0.25
HDAC4P56524 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC16.62■□□□□ 0.25
HDAC4P56524 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
HDAC4P56524 GPER1-207ENST00000619052 571 ntTSL 2 BASIC16.62■□□□□ 0.25
HDAC4P56524 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
HDAC4P56524 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
HDAC4P56524 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.62■□□□□ 0.25
HDAC4P56524 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HDAC4P56524 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
HDAC4P56524 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.62■□□□□ 0.25
HDAC4P56524 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
HDAC4P56524 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
HDAC4P56524 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
HDAC4P56524 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC16.62■□□□□ 0.25
HDAC4P56524 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HDAC4P56524 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
HDAC4P56524 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HDAC4P56524 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
HDAC4P56524 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HDAC4P56524 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
HDAC4P56524 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
HDAC4P56524 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC16.61■□□□□ 0.25
HDAC4P56524 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC16.61■□□□□ 0.25
HDAC4P56524 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC16.61■□□□□ 0.25
HDAC4P56524 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
HDAC4P56524 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC16.61■□□□□ 0.25
HDAC4P56524 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC16.61■□□□□ 0.25
HDAC4P56524 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HDAC4P56524 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.61■□□□□ 0.25
HDAC4P56524 FXR1-221ENST00000491674 365 ntTSL 2 BASIC16.61■□□□□ 0.25
HDAC4P56524 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC16.61■□□□□ 0.25
HDAC4P56524 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC16.61■□□□□ 0.25
HDAC4P56524 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC16.61■□□□□ 0.25
HDAC4P56524 SUOX-214ENST00000551841 906 ntTSL 3 BASIC16.61■□□□□ 0.25
HDAC4P56524 HNRNPUP1-201ENST00000554987 333 ntBASIC16.61■□□□□ 0.25
HDAC4P56524 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC16.61■□□□□ 0.25
HDAC4P56524 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC16.61■□□□□ 0.25
HDAC4P56524 AL589739.1-201ENST00000607720 493 ntBASIC16.61■□□□□ 0.25
HDAC4P56524 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms