Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC15.03■□□□□ -0
SOX3P41225 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC15.03■□□□□ -0
SOX3P41225 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC15.03■□□□□ -0
SOX3P41225 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC15.03■□□□□ -0
SOX3P41225 TREML5P-201ENST00000421694 576 ntBASIC15.03■□□□□ -0
SOX3P41225 AL353705.2-201ENST00000428243 662 ntBASIC15.03■□□□□ -0
SOX3P41225 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC15.03■□□□□ -0
SOX3P41225 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC15.03■□□□□ -0
SOX3P41225 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC15.03■□□□□ -0
SOX3P41225 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC15.03■□□□□ -0
SOX3P41225 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC15.03■□□□□ -0
SOX3P41225 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SOX3P41225 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
SOX3P41225 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
SOX3P41225 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SOX3P41225 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SOX3P41225 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SOX3P41225 TNRC18P2-201ENST00000417666 2714 ntBASIC15.03■□□□□ -0
SOX3P41225 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SOX3P41225 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC15.03■□□□□ -0
SOX3P41225 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
SOX3P41225 PRAL-201ENST00000624952 3286 ntBASIC15.03■□□□□ -0
SOX3P41225 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC15.03■□□□□ -0
SOX3P41225 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
SOX3P41225 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC15.03■□□□□ -0
SOX3P41225 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SOX3P41225 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SOX3P41225 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SOX3P41225 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC15.02■□□□□ -0
SOX3P41225 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC15.02■□□□□ -0
SOX3P41225 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC15.02■□□□□ -0
SOX3P41225 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC15.02■□□□□ -0
SOX3P41225 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC15.02■□□□□ -0
SOX3P41225 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC15.02■□□□□ -0
SOX3P41225 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.02■□□□□ -0
SOX3P41225 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC15.02■□□□□ -0
SOX3P41225 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC15.02■□□□□ -0
SOX3P41225 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
SOX3P41225 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC15.02■□□□□ -0
SOX3P41225 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SOX3P41225 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC15.02■□□□□ -0
SOX3P41225 FO538757.1-201ENST00000623083 1397 ntBASIC15.02■□□□□ -0
SOX3P41225 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.02■□□□□ -0
SOX3P41225 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC15.02■□□□□ -0
SOX3P41225 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC15.02■□□□□ -0
SOX3P41225 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SOX3P41225 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.02■□□□□ -0
SOX3P41225 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC15.02■□□□□ -0
SOX3P41225 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
SOX3P41225 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SOX3P41225 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC15.02■□□□□ -0
SOX3P41225 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
SOX3P41225 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC15.02■□□□□ -0
SOX3P41225 AC069120.2-201ENST00000524091 540 ntBASIC15.02■□□□□ -0
SOX3P41225 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SOX3P41225 MAX-210ENST00000555419 765 ntTSL 5 BASIC15.02■□□□□ -0
SOX3P41225 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC15.02■□□□□ -0
SOX3P41225 AL390955.2-201ENST00000603032 514 ntBASIC15.02■□□□□ -0
SOX3P41225 AC007967.4-201ENST00000614700 386 ntBASIC15.02■□□□□ -0
SOX3P41225 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC15.02■□□□□ -0
SOX3P41225 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.02□□□□□ -0.01
SOX3P41225 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
SOX3P41225 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SOX3P41225 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
SOX3P41225 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
SOX3P41225 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC15.02□□□□□ -0.01
SOX3P41225 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
SOX3P41225 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
SOX3P41225 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SOX3P41225 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SOX3P41225 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SOX3P41225 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.02□□□□□ -0.01
SOX3P41225 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
SOX3P41225 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
SOX3P41225 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SOX3P41225 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SOX3P41225 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC15.02□□□□□ -0.01
SOX3P41225 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
SOX3P41225 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
SOX3P41225 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SOX3P41225 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC15.01□□□□□ -0.01
SOX3P41225 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
SOX3P41225 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
SOX3P41225 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC15.01□□□□□ -0.01
SOX3P41225 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SOX3P41225 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SOX3P41225 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
SOX3P41225 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
SOX3P41225 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
SOX3P41225 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SOX3P41225 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SOX3P41225 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC15.01□□□□□ -0.01
SOX3P41225 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
SOX3P41225 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
SOX3P41225 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SOX3P41225 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
SOX3P41225 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
SOX3P41225 CENPM-205ENST00000404067 905 ntTSL 3 BASIC15.01□□□□□ -0.01
SOX3P41225 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC15.01□□□□□ -0.01
SOX3P41225 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms