Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
TPM1P09493 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC17.6■□□□□ 0.41
TPM1P09493 UPK3BP1-201ENST00000428678 509 ntBASIC17.6■□□□□ 0.41
TPM1P09493 MOK-208ENST00000519058 917 ntTSL 2 BASIC17.6■□□□□ 0.41
TPM1P09493 OR7E47P-204ENST00000575924 449 ntBASIC17.6■□□□□ 0.41
TPM1P09493 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC17.6■□□□□ 0.41
TPM1P09493 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC17.6■□□□□ 0.41
TPM1P09493 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
TPM1P09493 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
TPM1P09493 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC17.6■□□□□ 0.41
TPM1P09493 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC17.6■□□□□ 0.41
TPM1P09493 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
TPM1P09493 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TPM1P09493 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TPM1P09493 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TPM1P09493 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
TPM1P09493 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TPM1P09493 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TPM1P09493 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TPM1P09493 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
TPM1P09493 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC17.6■□□□□ 0.41
TPM1P09493 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
TPM1P09493 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TPM1P09493 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
TPM1P09493 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TPM1P09493 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM1P09493 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM1P09493 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM1P09493 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC17.59■□□□□ 0.41
TPM1P09493 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM1P09493 AC023908.3-201ENST00000564211 3047 ntBASIC17.59■□□□□ 0.41
TPM1P09493 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TPM1P09493 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM1P09493 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TPM1P09493 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TPM1P09493 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TPM1P09493 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM1P09493 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TPM1P09493 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
TPM1P09493 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC17.59■□□□□ 0.41
TPM1P09493 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM1P09493 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
TPM1P09493 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TPM1P09493 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM1P09493 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM1P09493 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
TPM1P09493 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM1P09493 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC17.59■□□□□ 0.41
TPM1P09493 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC17.59■□□□□ 0.41
TPM1P09493 METTL26-205ENST00000397666 726 ntTSL 2 BASIC17.59■□□□□ 0.41
TPM1P09493 SLC4A1APP2-201ENST00000424054 1259 ntBASIC17.59■□□□□ 0.41
TPM1P09493 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC17.59■□□□□ 0.41
TPM1P09493 HS6ST1P1-201ENST00000481504 1234 ntBASIC17.59■□□□□ 0.41
TPM1P09493 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC17.59■□□□□ 0.41
TPM1P09493 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TPM1P09493 CFL1-202ENST00000524553 860 ntTSL 2 BASIC17.59■□□□□ 0.41
TPM1P09493 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC17.59■□□□□ 0.41
TPM1P09493 CLEC4GP1-201ENST00000596555 870 ntBASIC17.59■□□□□ 0.41
TPM1P09493 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
TPM1P09493 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM1P09493 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM1P09493 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TPM1P09493 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM1P09493 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TPM1P09493 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC17.59■□□□□ 0.41
TPM1P09493 SNX18-202ENST00000343017 3140 ntBASIC17.58■□□□□ 0.41
TPM1P09493 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TPM1P09493 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC17.58■□□□□ 0.41
TPM1P09493 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC17.58■□□□□ 0.41
TPM1P09493 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.41
TPM1P09493 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TPM1P09493 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC17.58■□□□□ 0.41
TPM1P09493 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TPM1P09493 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
TPM1P09493 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
TPM1P09493 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
TPM1P09493 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
TPM1P09493 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TPM1P09493 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC17.58■□□□□ 0.4
TPM1P09493 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TPM1P09493 PRSS29P-201ENST00000440800 595 ntBASIC17.58■□□□□ 0.4
TPM1P09493 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC17.58■□□□□ 0.4
TPM1P09493 RNPS1P1-201ENST00000507437 918 ntBASIC17.58■□□□□ 0.4
TPM1P09493 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC17.58■□□□□ 0.4
TPM1P09493 TPM1-226ENST00000560959 925 ntTSL 2 BASIC17.58■□□□□ 0.4
TPM1P09493 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC17.58■□□□□ 0.4
TPM1P09493 MIR4751-201ENST00000578027 74 ntBASIC17.58■□□□□ 0.4
TPM1P09493 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
TPM1P09493 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC17.58■□□□□ 0.4
TPM1P09493 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TPM1P09493 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC17.58■□□□□ 0.4
TPM1P09493 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
TPM1P09493 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC17.58■□□□□ 0.4
TPM1P09493 POLL-206ENST00000370172 2308 ntTSL 2 BASIC17.58■□□□□ 0.4
TPM1P09493 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC17.58■□□□□ 0.4
TPM1P09493 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TPM1P09493 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TPM1P09493 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TPM1P09493 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TPM1P09493 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms