Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.78■□□□□ 0.28
RTN3O95197 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RTN3O95197 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.78■□□□□ 0.28
RTN3O95197 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
RTN3O95197 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.78■□□□□ 0.28
RTN3O95197 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RTN3O95197 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RTN3O95197 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
RTN3O95197 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC16.78■□□□□ 0.28
RTN3O95197 CRB3P1-201ENST00000449338 276 ntBASIC16.78■□□□□ 0.28
RTN3O95197 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RTN3O95197 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC16.78■□□□□ 0.28
RTN3O95197 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC16.78■□□□□ 0.28
RTN3O95197 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC16.78■□□□□ 0.28
RTN3O95197 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC16.78■□□□□ 0.28
RTN3O95197 AC104794.3-201ENST00000566840 1248 ntBASIC16.78■□□□□ 0.28
RTN3O95197 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC16.78■□□□□ 0.28
RTN3O95197 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC16.78■□□□□ 0.28
RTN3O95197 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC16.78■□□□□ 0.28
RTN3O95197 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RTN3O95197 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
RTN3O95197 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RTN3O95197 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RTN3O95197 AC004461.2-201ENST00000629517 803 ntBASIC16.78■□□□□ 0.28
RTN3O95197 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16.78■□□□□ 0.28
RTN3O95197 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
RTN3O95197 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
RTN3O95197 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC16.78■□□□□ 0.28
RTN3O95197 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
RTN3O95197 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RTN3O95197 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.78■□□□□ 0.28
RTN3O95197 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
RTN3O95197 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RTN3O95197 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16.78■□□□□ 0.28
RTN3O95197 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
RTN3O95197 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
RTN3O95197 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RTN3O95197 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RTN3O95197 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RTN3O95197 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
RTN3O95197 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
RTN3O95197 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
RTN3O95197 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.77■□□□□ 0.28
RTN3O95197 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RTN3O95197 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RTN3O95197 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RTN3O95197 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
RTN3O95197 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RTN3O95197 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
RTN3O95197 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RTN3O95197 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
RTN3O95197 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC16.77■□□□□ 0.28
RTN3O95197 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC16.77■□□□□ 0.28
RTN3O95197 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
RTN3O95197 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RTN3O95197 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC16.77■□□□□ 0.28
RTN3O95197 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
RTN3O95197 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC16.77■□□□□ 0.28
RTN3O95197 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RTN3O95197 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.77■□□□□ 0.28
RTN3O95197 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
RTN3O95197 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
RTN3O95197 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
RTN3O95197 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
RTN3O95197 AZGP1P1-201ENST00000411909 902 ntBASIC16.77■□□□□ 0.28
RTN3O95197 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
RTN3O95197 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC16.77■□□□□ 0.28
RTN3O95197 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
RTN3O95197 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC16.77■□□□□ 0.28
RTN3O95197 DOC2GP-202ENST00000514950 1163 ntBASIC16.77■□□□□ 0.28
RTN3O95197 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC16.77■□□□□ 0.28
RTN3O95197 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
RTN3O95197 AC027307.3-201ENST00000594262 1100 ntBASIC16.77■□□□□ 0.28
RTN3O95197 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC16.77■□□□□ 0.28
RTN3O95197 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
RTN3O95197 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
RTN3O95197 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.77■□□□□ 0.28
RTN3O95197 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
RTN3O95197 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
RTN3O95197 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
RTN3O95197 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
RTN3O95197 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
RTN3O95197 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
RTN3O95197 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.77■□□□□ 0.27
RTN3O95197 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
RTN3O95197 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
RTN3O95197 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.77■□□□□ 0.27
RTN3O95197 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
RTN3O95197 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
RTN3O95197 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
RTN3O95197 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
RTN3O95197 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC16.76■□□□□ 0.27
RTN3O95197 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
RTN3O95197 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
RTN3O95197 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC16.76■□□□□ 0.27
RTN3O95197 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
RTN3O95197 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
RTN3O95197 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC16.76■□□□□ 0.27
RTN3O95197 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RTN3O95197 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms