Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
NPHP4O75161 AC073150.1-201ENST00000450406 1084 ntBASIC21.85■■□□□ 1.09
NPHP4O75161 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC21.85■■□□□ 1.09
NPHP4O75161 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
NPHP4O75161 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
NPHP4O75161 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC21.85■■□□□ 1.09
NPHP4O75161 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
NPHP4O75161 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
NPHP4O75161 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
NPHP4O75161 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
NPHP4O75161 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC21.85■■□□□ 1.09
NPHP4O75161 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC21.85■■□□□ 1.09
NPHP4O75161 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
NPHP4O75161 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
NPHP4O75161 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC21.85■■□□□ 1.09
NPHP4O75161 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
NPHP4O75161 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC21.85■■□□□ 1.09
NPHP4O75161 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
NPHP4O75161 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
NPHP4O75161 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
NPHP4O75161 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
NPHP4O75161 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
NPHP4O75161 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
NPHP4O75161 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
NPHP4O75161 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
NPHP4O75161 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
NPHP4O75161 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC21.84■■□□□ 1.09
NPHP4O75161 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC21.84■■□□□ 1.09
NPHP4O75161 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC21.84■■□□□ 1.09
NPHP4O75161 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC21.84■■□□□ 1.09
NPHP4O75161 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC21.84■■□□□ 1.09
NPHP4O75161 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
NPHP4O75161 AC090164.2-201ENST00000611487 516 ntBASIC21.84■■□□□ 1.09
NPHP4O75161 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
NPHP4O75161 AC051619.9-201ENST00000623237 597 ntBASIC21.84■■□□□ 1.09
NPHP4O75161 AL162426.1-201ENST00000624141 743 ntBASIC21.84■■□□□ 1.09
NPHP4O75161 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
NPHP4O75161 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
NPHP4O75161 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC21.84■■□□□ 1.09
NPHP4O75161 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
NPHP4O75161 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC21.84■■□□□ 1.09
NPHP4O75161 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
NPHP4O75161 AC025271.4-201ENST00000621477 1726 ntBASIC21.84■■□□□ 1.09
NPHP4O75161 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC21.84■■□□□ 1.09
NPHP4O75161 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
NPHP4O75161 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
NPHP4O75161 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
NPHP4O75161 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
NPHP4O75161 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC21.83■■□□□ 1.09
NPHP4O75161 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
NPHP4O75161 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
NPHP4O75161 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC21.83■■□□□ 1.09
NPHP4O75161 LSM5-207ENST00000410044 687 ntTSL 3 BASIC21.83■■□□□ 1.09
NPHP4O75161 PPOX-204ENST00000462866 473 ntTSL 5 BASIC21.83■■□□□ 1.09
NPHP4O75161 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC21.83■■□□□ 1.09
NPHP4O75161 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC21.83■■□□□ 1.09
NPHP4O75161 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC21.83■■□□□ 1.09
NPHP4O75161 GMFG-209ENST00000600322 622 ntTSL 5 BASIC21.83■■□□□ 1.09
NPHP4O75161 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
NPHP4O75161 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
NPHP4O75161 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC21.83■■□□□ 1.08
NPHP4O75161 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
NPHP4O75161 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC21.83■■□□□ 1.08
NPHP4O75161 AMT-224ENST00000635808 1610 ntTSL 5 BASIC21.83■■□□□ 1.08
NPHP4O75161 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
NPHP4O75161 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC21.82■■□□□ 1.08
NPHP4O75161 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
NPHP4O75161 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
NPHP4O75161 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
NPHP4O75161 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC21.82■■□□□ 1.08
NPHP4O75161 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC21.82■■□□□ 1.08
NPHP4O75161 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC21.82■■□□□ 1.08
NPHP4O75161 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
NPHP4O75161 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
NPHP4O75161 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
NPHP4O75161 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC21.82■■□□□ 1.08
NPHP4O75161 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
NPHP4O75161 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC21.82■■□□□ 1.08
NPHP4O75161 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC21.82■■□□□ 1.08
NPHP4O75161 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC21.82■■□□□ 1.08
NPHP4O75161 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
NPHP4O75161 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC21.82■■□□□ 1.08
NPHP4O75161 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
NPHP4O75161 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC21.82■■□□□ 1.08
NPHP4O75161 LRRFIP1P1-201ENST00000498774 2246 ntBASIC21.82■■□□□ 1.08
NPHP4O75161 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP4O75161 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC21.81■■□□□ 1.08
NPHP4O75161 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP4O75161 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC21.81■■□□□ 1.08
NPHP4O75161 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
NPHP4O75161 AC090857.1-201ENST00000527400 390 ntBASIC21.81■■□□□ 1.08
NPHP4O75161 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC21.81■■□□□ 1.08
NPHP4O75161 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP4O75161 MIR6842-201ENST00000612539 65 ntBASIC21.81■■□□□ 1.08
NPHP4O75161 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC21.81■■□□□ 1.08
NPHP4O75161 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP4O75161 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
NPHP4O75161 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP4O75161 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP4O75161 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms