Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 NOL4L-203ENST00000359676 5991 ntTSL 2 BASIC12.87□□□□□ -0.35
HMGB3O15347 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
HMGB3O15347 PRR26-201ENST00000381489 7250 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
HMGB3O15347 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC12.87□□□□□ -0.35
HMGB3O15347 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HMGB3O15347 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HMGB3O15347 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HMGB3O15347 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC12.87□□□□□ -0.35
HMGB3O15347 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
HMGB3O15347 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
HMGB3O15347 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC12.87□□□□□ -0.35
HMGB3O15347 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC12.87□□□□□ -0.35
HMGB3O15347 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC12.87□□□□□ -0.35
HMGB3O15347 AL590644.1-201ENST00000412427 4676 ntTSL 4 BASIC12.87□□□□□ -0.35
HMGB3O15347 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
HMGB3O15347 AL645929.1-201ENST00000420084 975 ntBASIC12.87□□□□□ -0.35
HMGB3O15347 TSPY5P-201ENST00000426936 936 ntBASIC12.87□□□□□ -0.35
HMGB3O15347 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC12.87□□□□□ -0.35
HMGB3O15347 HOMER2P1-201ENST00000455653 964 ntBASIC12.87□□□□□ -0.35
HMGB3O15347 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC12.87□□□□□ -0.35
HMGB3O15347 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HMGB3O15347 CLN6-204ENST00000564752 900 ntTSL 3 BASIC12.87□□□□□ -0.35
HMGB3O15347 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC12.87□□□□□ -0.35
HMGB3O15347 MPDU1-223ENST00000582151 728 ntBASIC12.87□□□□□ -0.35
HMGB3O15347 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC12.87□□□□□ -0.35
HMGB3O15347 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
HMGB3O15347 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC12.87□□□□□ -0.35
HMGB3O15347 AL590326.2-201ENST00000625139 305 ntBASIC12.87□□□□□ -0.35
HMGB3O15347 CLN6-214ENST00000636314 442 ntTSL 3 BASIC12.87□□□□□ -0.35
HMGB3O15347 AP006294.2-201ENST00000641667 209 ntBASIC12.87□□□□□ -0.35
HMGB3O15347 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
HMGB3O15347 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC12.87□□□□□ -0.35
HMGB3O15347 MAP4K2-201ENST00000294066 7178 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HMGB3O15347 PTCD1-201ENST00000292478 5582 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HMGB3O15347 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
HMGB3O15347 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HMGB3O15347 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC12.87□□□□□ -0.35
HMGB3O15347 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
HMGB3O15347 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
HMGB3O15347 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
HMGB3O15347 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
HMGB3O15347 AC092919.2-201ENST00000623631 1645 ntBASIC12.87□□□□□ -0.35
HMGB3O15347 SEMA6D-206ENST00000389428 5874 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
HMGB3O15347 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HMGB3O15347 TMEM131L-202ENST00000409663 5017 ntAPPRIS P3 TSL 5 BASIC12.87□□□□□ -0.35
HMGB3O15347 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC12.87□□□□□ -0.35
HMGB3O15347 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
HMGB3O15347 FAM168B-202ENST00000409185 5285 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HMGB3O15347 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
HMGB3O15347 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC12.87□□□□□ -0.35
HMGB3O15347 AC087481.3-201ENST00000602886 1894 ntBASIC12.87□□□□□ -0.35
HMGB3O15347 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC12.87□□□□□ -0.35
HMGB3O15347 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HMGB3O15347 AL590787.1-201ENST00000568856 1315 ntBASIC12.87□□□□□ -0.35
HMGB3O15347 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
HMGB3O15347 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
HMGB3O15347 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC12.86□□□□□ -0.35
HMGB3O15347 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
HMGB3O15347 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
HMGB3O15347 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HMGB3O15347 ARPIN-201ENST00000357484 7591 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HMGB3O15347 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
HMGB3O15347 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
HMGB3O15347 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HMGB3O15347 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC12.86□□□□□ -0.35
HMGB3O15347 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HMGB3O15347 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
HMGB3O15347 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
HMGB3O15347 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC12.86□□□□□ -0.35
HMGB3O15347 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC12.86□□□□□ -0.35
HMGB3O15347 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
HMGB3O15347 CELF1-204ENST00000395290 7666 ntAPPRIS ALT1 TSL 2 BASIC12.86□□□□□ -0.35
HMGB3O15347 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
HMGB3O15347 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
HMGB3O15347 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HMGB3O15347 ASAP1-201ENST00000357668 6344 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
HMGB3O15347 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
HMGB3O15347 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HMGB3O15347 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
HMGB3O15347 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HMGB3O15347 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HMGB3O15347 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
HMGB3O15347 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HMGB3O15347 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
HMGB3O15347 SPDYE21P-201ENST00000413323 827 ntBASIC12.86□□□□□ -0.35
HMGB3O15347 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC12.86□□□□□ -0.35
HMGB3O15347 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC12.86□□□□□ -0.35
HMGB3O15347 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
HMGB3O15347 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC12.86□□□□□ -0.35
HMGB3O15347 AC083849.1-201ENST00000615227 514 ntBASIC12.86□□□□□ -0.35
HMGB3O15347 AC010654.1-201ENST00000615722 808 ntBASIC12.86□□□□□ -0.35
HMGB3O15347 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
HMGB3O15347 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
HMGB3O15347 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
HMGB3O15347 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
HMGB3O15347 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
HMGB3O15347 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC12.86□□□□□ -0.35
HMGB3O15347 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC12.86□□□□□ -0.35
HMGB3O15347 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HMGB3O15347 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC12.86□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms