Protein–RNA interactions for Protein: Q9Y6Z2

LINC01558, Uncharacterized protein encoded by LINC01558, humanhuman

Predictions only

Length 57 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01558Q9Y6Z2 FOXN3-201ENST00000261302 2542 ntAPPRIS ALT1 TSL 5 BASIC8.17□□□□□ -1.1
LINC01558Q9Y6Z2 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC8.17□□□□□ -1.1
LINC01558Q9Y6Z2 DLGAP1-203ENST00000400147 5258 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 DLGAP1-206ENST00000400155 5257 ntTSL 2 BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 KLHL7-202ENST00000339077 5620 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 KIAA1217-209ENST00000430453 5962 ntAPPRIS ALT2 TSL 5 BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 KIAA1217-211ENST00000458595 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 ABI1-213ENST00000536334 3380 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 NRXN1-259ENST00000637511 3651 ntTSL 5 BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 SH2D5-201ENST00000375031 3705 ntTSL 2 BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 GRAMD1B-216ENST00000638157 3849 ntTSL 5 BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 POTEE-201ENST00000356920 4159 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 ERBB2-202ENST00000406381 4564 ntTSL 5 BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 DCAF13-201ENST00000297579 2642 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 NFKBIZ-202ENST00000326172 3923 ntAPPRIS P3 TSL 1 (best) BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 DCDC2-202ENST00000378454 4707 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 LITAF-203ENST00000413364 2292 ntTSL 2 BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 WASHC1-201ENST00000442898 1827 ntAPPRIS P1 TSL 2 BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 CYB561D1-206ENST00000496961 3424 ntTSL 2 BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 SMAD1-215ENST00000515385 2085 ntAPPRIS P1 TSL 2 BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 SLC4A8-205ENST00000535225 2262 ntTSL 2 BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 TESC-206ENST00000541210 936 ntTSL 3 BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 SLC9A7P1-202ENST00000556476 2239 ntBASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 MIR3180-4-201ENST00000582223 153 ntBASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 AC008622.2-201ENST00000617006 1229 ntBASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 TFG-210ENST00000620299 1289 ntTSL 5 BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 SMARCA2-209ENST00000382203 5867 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 SESN3-203ENST00000536441 9558 ntAPPRIS P1 TSL 2 BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 ADGRL1-201ENST00000340736 7853 ntAPPRIS ALT2 TSL 1 (best) BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 ADGRA1-201ENST00000392606 3438 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 GOLGA3-201ENST00000204726 9252 ntAPPRIS P3 TSL 5 BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 NF1-204ENST00000431387 2889 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 UQCRB-201ENST00000287022 5575 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 USP3-204ENST00000540797 5474 ntTSL 2 BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC8.16□□□□□ -1.1
LINC01558Q9Y6Z2 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC8.15□□□□□ -1.1
LINC01558Q9Y6Z2 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
LINC01558Q9Y6Z2 AC027020.2-201ENST00000602585 2389 ntBASIC8.15□□□□□ -1.1
LINC01558Q9Y6Z2 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC8.15□□□□□ -1.1
LINC01558Q9Y6Z2 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC8.15□□□□□ -1.1
LINC01558Q9Y6Z2 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC8.15□□□□□ -1.1
LINC01558Q9Y6Z2 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC8.15□□□□□ -1.1
LINC01558Q9Y6Z2 ANKRD49-210ENST00000544612 2268 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
LINC01558Q9Y6Z2 GEM-201ENST00000297596 2208 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
LINC01558Q9Y6Z2 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
LINC01558Q9Y6Z2 FUK-202ENST00000378912 3925 ntTSL 2 BASIC8.15□□□□□ -1.1
LINC01558Q9Y6Z2 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
LINC01558Q9Y6Z2 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC8.15□□□□□ -1.1
LINC01558Q9Y6Z2 HADHB-209ENST00000545822 1870 ntTSL 5 BASIC8.15□□□□□ -1.1
LINC01558Q9Y6Z2 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC8.15□□□□□ -1.1
LINC01558Q9Y6Z2 COL16A1-202ENST00000373668 3643 ntTSL 2 BASIC8.15□□□□□ -1.1
LINC01558Q9Y6Z2 SNRK-201ENST00000296088 5183 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
LINC01558Q9Y6Z2 GATA2-201ENST00000341105 3367 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
LINC01558Q9Y6Z2 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC8.15□□□□□ -1.1
LINC01558Q9Y6Z2 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC8.15□□□□□ -1.1
LINC01558Q9Y6Z2 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC8.15□□□□□ -1.1
LINC01558Q9Y6Z2 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC8.15□□□□□ -1.1
LINC01558Q9Y6Z2 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC8.15□□□□□ -1.1
LINC01558Q9Y6Z2 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
LINC01558Q9Y6Z2 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
LINC01558Q9Y6Z2 UNC5CL-201ENST00000244565 3136 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
LINC01558Q9Y6Z2 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC8.15□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms