Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 PGM5P2-202ENST00000637225 1043 ntBASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 U82695.1-201ENST00000635752 1889 ntBASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 AC073621.1-201ENST00000392730 636 ntBASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 DUSP5P1-201ENST00000441325 1139 ntBASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 MTRF1LP2-201ENST00000506027 1122 ntBASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 SKP2-204ENST00000508514 821 ntTSL 3 BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 IGHV3-65-201ENST00000523210 341 ntBASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 SDHD-206ENST00000528182 754 ntTSL 3 BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 AL160237.2-201ENST00000556165 472 ntBASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 RPS29-206ENST00000557111 488 ntTSL 2 BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 ETFA-208ENST00000559602 792 ntTSL 3 BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 AC105339.3-201ENST00000560043 636 ntBASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 METTL23-204ENST00000586752 904 ntTSL 2 BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 IFNL4P1-201ENST00000607083 540 ntBASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 AC021097.1-201ENST00000607902 574 ntBASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 AC112504.1-201ENST00000623415 1841 ntBASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
CHMP1AQ9HD42 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CHMP1AQ9HD42 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC13.79□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms