Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 NME2-201ENST00000393183 568 ntTSL 2 BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 AL513480.1-201ENST00000451731 511 ntBASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 RPS29-206ENST00000557111 488 ntTSL 2 BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 AC041040.2-201ENST00000622926 2899 ntBASIC15.54■□□□□ 0.08
CCDC28BQ9BUN5 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 BEND3P1-201ENST00000421591 1944 ntBASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 GSN-215ENST00000545652 2428 ntTSL 2 BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 FLII-221ENST00000578558 2377 ntTSL 5 BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 AL122018.1-201ENST00000446607 2310 ntBASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 INIP-202ENST00000374236 874 ntTSL 2 BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 PRSS29P-201ENST00000440800 595 ntBASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 AC073648.2-201ENST00000510116 352 ntBASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 FHL2-212ENST00000607522 759 ntTSL 2 BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 AC073439.1-201ENST00000624121 1774 ntBASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
CCDC28BQ9BUN5 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CCDC28BQ9BUN5 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
CCDC28BQ9BUN5 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CCDC28BQ9BUN5 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
CCDC28BQ9BUN5 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CCDC28BQ9BUN5 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC15.52■□□□□ 0.08
CCDC28BQ9BUN5 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CCDC28BQ9BUN5 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC15.52■□□□□ 0.08
CCDC28BQ9BUN5 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CCDC28BQ9BUN5 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC15.52■□□□□ 0.08
CCDC28BQ9BUN5 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CCDC28BQ9BUN5 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC15.52■□□□□ 0.08
CCDC28BQ9BUN5 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC15.52■□□□□ 0.08
CCDC28BQ9BUN5 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC15.52■□□□□ 0.08
CCDC28BQ9BUN5 RMI2-205ENST00000576027 818 ntTSL 2 BASIC15.52■□□□□ 0.08
CCDC28BQ9BUN5 CLEC4GP1-201ENST00000596555 870 ntBASIC15.52■□□□□ 0.08
CCDC28BQ9BUN5 AL009183.1-201ENST00000603760 355 ntBASIC15.52■□□□□ 0.08
CCDC28BQ9BUN5 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC15.52■□□□□ 0.08
CCDC28BQ9BUN5 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CCDC28BQ9BUN5 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.52■□□□□ 0.08
CCDC28BQ9BUN5 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.07
CCDC28BQ9BUN5 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
CCDC28BQ9BUN5 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC15.52■□□□□ 0.07
CCDC28BQ9BUN5 AC009090.5-201ENST00000624886 2285 ntBASIC15.52■□□□□ 0.07
CCDC28BQ9BUN5 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC15.52■□□□□ 0.07
CCDC28BQ9BUN5 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
CCDC28BQ9BUN5 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CCDC28BQ9BUN5 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CCDC28BQ9BUN5 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CCDC28BQ9BUN5 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC15.52■□□□□ 0.07
CCDC28BQ9BUN5 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
CCDC28BQ9BUN5 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC15.52■□□□□ 0.07
CCDC28BQ9BUN5 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC15.52■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms