Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL12A1Q99715 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL12A1Q99715 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL12A1Q99715 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC13.63□□□□□ -0.23
COL12A1Q99715 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC13.63□□□□□ -0.23
COL12A1Q99715 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL12A1Q99715 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL12A1Q99715 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL12A1Q99715 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL12A1Q99715 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC13.63□□□□□ -0.23
COL12A1Q99715 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC13.62□□□□□ -0.23
COL12A1Q99715 PROK2-201ENST00000295619 1022 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL12A1Q99715 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL12A1Q99715 HKR1-225ENST00000592168 566 ntTSL 4 BASIC13.62□□□□□ -0.23
COL12A1Q99715 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
COL12A1Q99715 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
COL12A1Q99715 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC13.62□□□□□ -0.23
COL12A1Q99715 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL12A1Q99715 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL12A1Q99715 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL12A1Q99715 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC13.62□□□□□ -0.23
COL12A1Q99715 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC13.62□□□□□ -0.23
COL12A1Q99715 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL12A1Q99715 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC13.62□□□□□ -0.23
COL12A1Q99715 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL12A1Q99715 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
COL12A1Q99715 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL12A1Q99715 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL12A1Q99715 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL12A1Q99715 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC13.62□□□□□ -0.23
COL12A1Q99715 AC079112.1-201ENST00000454972 939 ntBASIC13.62□□□□□ -0.23
COL12A1Q99715 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC13.62□□□□□ -0.23
COL12A1Q99715 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC13.62□□□□□ -0.23
COL12A1Q99715 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC13.62□□□□□ -0.23
COL12A1Q99715 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL12A1Q99715 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC13.62□□□□□ -0.23
COL12A1Q99715 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
COL12A1Q99715 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL12A1Q99715 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL12A1Q99715 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC13.62□□□□□ -0.23
COL12A1Q99715 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL12A1Q99715 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL12A1Q99715 AC148477.4-201ENST00000613430 1793 ntBASIC13.62□□□□□ -0.23
COL12A1Q99715 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL12A1Q99715 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL12A1Q99715 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC13.62□□□□□ -0.23
COL12A1Q99715 AC079178.1-201ENST00000420915 656 ntBASIC13.62□□□□□ -0.23
COL12A1Q99715 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC13.62□□□□□ -0.23
COL12A1Q99715 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC13.62□□□□□ -0.23
COL12A1Q99715 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC13.62□□□□□ -0.23
COL12A1Q99715 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC13.62□□□□□ -0.23
COL12A1Q99715 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC13.62□□□□□ -0.23
COL12A1Q99715 AC138466.4-201ENST00000623965 852 ntBASIC13.62□□□□□ -0.23
COL12A1Q99715 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
COL12A1Q99715 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
COL12A1Q99715 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL12A1Q99715 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC13.61□□□□□ -0.23
COL12A1Q99715 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
COL12A1Q99715 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL12A1Q99715 TK1-203ENST00000588734 1681 ntTSL 2 BASIC13.61□□□□□ -0.23
COL12A1Q99715 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
COL12A1Q99715 PGGT1BP2-201ENST00000398621 1028 ntBASIC13.61□□□□□ -0.23
COL12A1Q99715 RAC2-202ENST00000401529 569 ntTSL 4 BASIC13.61□□□□□ -0.23
COL12A1Q99715 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC13.61□□□□□ -0.23
COL12A1Q99715 AL008707.1-201ENST00000422498 534 ntBASIC13.61□□□□□ -0.23
COL12A1Q99715 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC13.61□□□□□ -0.23
COL12A1Q99715 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC13.61□□□□□ -0.23
COL12A1Q99715 FO393412.1-201ENST00000619841 382 ntBASIC13.61□□□□□ -0.23
COL12A1Q99715 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC13.61□□□□□ -0.23
COL12A1Q99715 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
COL12A1Q99715 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL12A1Q99715 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
COL12A1Q99715 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL12A1Q99715 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL12A1Q99715 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
COL12A1Q99715 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC13.61□□□□□ -0.23
COL12A1Q99715 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC13.61□□□□□ -0.23
COL12A1Q99715 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL12A1Q99715 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC13.61□□□□□ -0.23
COL12A1Q99715 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL12A1Q99715 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL12A1Q99715 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL12A1Q99715 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC13.61□□□□□ -0.23
COL12A1Q99715 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL12A1Q99715 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC13.61□□□□□ -0.23
COL12A1Q99715 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC13.61□□□□□ -0.23
COL12A1Q99715 AC012158.2-201ENST00000536546 354 ntBASIC13.61□□□□□ -0.23
COL12A1Q99715 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC13.61□□□□□ -0.23
COL12A1Q99715 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL12A1Q99715 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC13.61□□□□□ -0.23
COL12A1Q99715 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC13.61□□□□□ -0.23
COL12A1Q99715 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL12A1Q99715 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
COL12A1Q99715 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL12A1Q99715 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL12A1Q99715 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL12A1Q99715 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL12A1Q99715 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL12A1Q99715 SLC16A6P1-201ENST00000413214 1059 ntBASIC13.6□□□□□ -0.23
COL12A1Q99715 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC13.6□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 65.8 ms