Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 ILF3-AS1-201ENST00000591501 1983 ntBASIC12.31□□□□□ -0.44
CCDC140Q96MF4 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 BAD-202ENST00000394531 631 ntTSL 3 BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 LBH-203ENST00000404397 543 ntTSL 4 BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 FO393414.2-201ENST00000405153 598 ntBASIC12.31□□□□□ -0.44
CCDC140Q96MF4 RPL37AP1-201ENST00000412502 279 ntBASIC12.31□□□□□ -0.44
CCDC140Q96MF4 AC107890.1-201ENST00000422478 521 ntBASIC12.31□□□□□ -0.44
CCDC140Q96MF4 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 HLA-V-204ENST00000476601 1289 ntBASIC12.31□□□□□ -0.44
CCDC140Q96MF4 PTK7-212ENST00000476760 902 ntTSL 2 BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 BAD-207ENST00000544785 525 ntTSL 3 BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 AC097359.3-201ENST00000603982 1210 ntBASIC12.31□□□□□ -0.44
CCDC140Q96MF4 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 MBP-202ENST00000355994 2772 ntTSL 5 BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC12.31□□□□□ -0.44
CCDC140Q96MF4 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 FO538757.1-201ENST00000623083 1397 ntBASIC12.3□□□□□ -0.44
CCDC140Q96MF4 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 AC136604.1-201ENST00000418535 575 ntBASIC12.3□□□□□ -0.44
CCDC140Q96MF4 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 AC067863.1-201ENST00000494933 530 ntBASIC12.3□□□□□ -0.44
CCDC140Q96MF4 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 AC069120.2-201ENST00000524091 540 ntBASIC12.3□□□□□ -0.44
CCDC140Q96MF4 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 AC140878.1-201ENST00000565277 250 ntBASIC12.3□□□□□ -0.44
CCDC140Q96MF4 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 TEX28P1-201ENST00000613479 1221 ntBASIC12.3□□□□□ -0.44
CCDC140Q96MF4 AL138828.2-201ENST00000615812 383 ntBASIC12.3□□□□□ -0.44
CCDC140Q96MF4 TEX28P2-201ENST00000617764 1221 ntBASIC12.3□□□□□ -0.44
CCDC140Q96MF4 AC073592.8-201ENST00000624126 511 ntBASIC12.3□□□□□ -0.44
CCDC140Q96MF4 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
CCDC140Q96MF4 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC12.3□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms