Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC11.98□□□□□ -0.49
LINC00477Q96M19 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00477Q96M19 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00477Q96M19 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00477Q96M19 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00477Q96M19 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00477Q96M19 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00477Q96M19 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC11.98□□□□□ -0.49
LINC00477Q96M19 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00477Q96M19 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00477Q96M19 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00477Q96M19 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
LINC00477Q96M19 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00477Q96M19 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00477Q96M19 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC11.98□□□□□ -0.49
LINC00477Q96M19 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC11.98□□□□□ -0.49
LINC00477Q96M19 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC11.98□□□□□ -0.49
LINC00477Q96M19 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC11.98□□□□□ -0.49
LINC00477Q96M19 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC11.98□□□□□ -0.49
LINC00477Q96M19 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
LINC00477Q96M19 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC11.98□□□□□ -0.49
LINC00477Q96M19 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC11.98□□□□□ -0.49
LINC00477Q96M19 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC11.98□□□□□ -0.49
LINC00477Q96M19 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC11.98□□□□□ -0.49
LINC00477Q96M19 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
LINC00477Q96M19 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00477Q96M19 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00477Q96M19 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00477Q96M19 CICP13-201ENST00000422015 2789 ntBASIC11.98□□□□□ -0.49
LINC00477Q96M19 AC092850.2-201ENST00000623821 2697 ntBASIC11.98□□□□□ -0.49
LINC00477Q96M19 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC11.98□□□□□ -0.49
LINC00477Q96M19 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC11.98□□□□□ -0.49
LINC00477Q96M19 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00477Q96M19 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00477Q96M19 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00477Q96M19 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00477Q96M19 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
LINC00477Q96M19 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC11.98□□□□□ -0.49
LINC00477Q96M19 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
LINC00477Q96M19 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
LINC00477Q96M19 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
LINC00477Q96M19 NARF-206ENST00000457415 1668 ntTSL 5 BASIC11.97□□□□□ -0.49
LINC00477Q96M19 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC11.97□□□□□ -0.49
LINC00477Q96M19 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC11.97□□□□□ -0.49
LINC00477Q96M19 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC11.97□□□□□ -0.49
LINC00477Q96M19 AL691432.1-201ENST00000596308 1422 ntBASIC11.97□□□□□ -0.49
LINC00477Q96M19 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 HLA-A-201ENST00000376802 1334 ntBASIC11.97□□□□□ -0.49
LINC00477Q96M19 AKAP8P1-201ENST00000434743 1349 ntBASIC11.97□□□□□ -0.49
LINC00477Q96M19 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC11.97□□□□□ -0.49
LINC00477Q96M19 TPM4P1-201ENST00000436100 807 ntBASIC11.97□□□□□ -0.49
LINC00477Q96M19 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC11.97□□□□□ -0.49
LINC00477Q96M19 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC11.97□□□□□ -0.49
LINC00477Q96M19 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 PDPK2P-202ENST00000562415 1191 ntBASIC11.97□□□□□ -0.49
LINC00477Q96M19 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC11.97□□□□□ -0.49
LINC00477Q96M19 RARRES2P8-201ENST00000566335 367 ntBASIC11.97□□□□□ -0.49
LINC00477Q96M19 AC018845.2-201ENST00000568326 409 ntBASIC11.97□□□□□ -0.49
LINC00477Q96M19 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC11.97□□□□□ -0.49
LINC00477Q96M19 SLC25A6P4-201ENST00000586535 553 ntBASIC11.97□□□□□ -0.49
LINC00477Q96M19 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
LINC00477Q96M19 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC11.97□□□□□ -0.49
LINC00477Q96M19 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC11.97□□□□□ -0.49
LINC00477Q96M19 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms