Protein–RNA interactions for Protein: P54277

PMS1, PMS1 protein homolog 1, humanhuman

Known RBP Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PMS1P54277 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
PMS1P54277 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
PMS1P54277 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
PMS1P54277 STK33-217ENST00000534493 1895 ntTSL 2 BASIC17.52■□□□□ 0.39
PMS1P54277 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC17.52■□□□□ 0.39
PMS1P54277 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC17.52■□□□□ 0.39
PMS1P54277 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PMS1P54277 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PMS1P54277 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PMS1P54277 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PMS1P54277 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PMS1P54277 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PMS1P54277 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PMS1P54277 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
PMS1P54277 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PMS1P54277 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PMS1P54277 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PMS1P54277 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
PMS1P54277 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PMS1P54277 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PMS1P54277 SPDYE14P-201ENST00000442619 822 ntBASIC17.51■□□□□ 0.39
PMS1P54277 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PMS1P54277 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC17.51■□□□□ 0.39
PMS1P54277 TSFM-210ENST00000550559 897 ntTSL 5 BASIC17.51■□□□□ 0.39
PMS1P54277 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC17.51■□□□□ 0.39
PMS1P54277 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC17.51■□□□□ 0.39
PMS1P54277 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
PMS1P54277 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PMS1P54277 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PMS1P54277 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PMS1P54277 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PMS1P54277 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
PMS1P54277 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PMS1P54277 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PMS1P54277 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
PMS1P54277 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC17.51■□□□□ 0.39
PMS1P54277 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
PMS1P54277 TSPY26P-202ENST00000565928 3884 ntBASIC17.5■□□□□ 0.39
PMS1P54277 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PMS1P54277 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
PMS1P54277 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PMS1P54277 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PMS1P54277 MECR-202ENST00000373791 2416 ntTSL 2 BASIC17.5■□□□□ 0.39
PMS1P54277 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
PMS1P54277 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
PMS1P54277 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PMS1P54277 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC17.5■□□□□ 0.39
PMS1P54277 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
PMS1P54277 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC17.5■□□□□ 0.39
PMS1P54277 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PMS1P54277 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC17.5■□□□□ 0.39
PMS1P54277 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
PMS1P54277 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PMS1P54277 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC17.5■□□□□ 0.39
PMS1P54277 KRT18P32-201ENST00000424695 1287 ntBASIC17.5■□□□□ 0.39
PMS1P54277 DNAJB3-201ENST00000446806 729 ntBASIC17.5■□□□□ 0.39
PMS1P54277 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC17.5■□□□□ 0.39
PMS1P54277 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PMS1P54277 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC17.5■□□□□ 0.39
PMS1P54277 AC105021.1-202ENST00000570572 669 ntBASIC17.5■□□□□ 0.39
PMS1P54277 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PMS1P54277 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC17.5■□□□□ 0.39
PMS1P54277 RAB34-224ENST00000636513 888 ntTSL 5 BASIC17.5■□□□□ 0.39
PMS1P54277 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
PMS1P54277 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC17.5■□□□□ 0.39
PMS1P54277 PKD1P5-201ENST00000532415 10291 ntBASIC17.5■□□□□ 0.39
PMS1P54277 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PMS1P54277 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PMS1P54277 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.5■□□□□ 0.39
PMS1P54277 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PMS1P54277 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
PMS1P54277 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
PMS1P54277 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PMS1P54277 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PMS1P54277 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC17.5■□□□□ 0.39
PMS1P54277 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PMS1P54277 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PMS1P54277 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PMS1P54277 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PMS1P54277 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PMS1P54277 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC17.49■□□□□ 0.39
PMS1P54277 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PMS1P54277 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
PMS1P54277 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PMS1P54277 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
PMS1P54277 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PMS1P54277 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PMS1P54277 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PMS1P54277 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC17.49■□□□□ 0.39
PMS1P54277 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC17.49■□□□□ 0.39
PMS1P54277 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
PMS1P54277 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PMS1P54277 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
PMS1P54277 COA5-202ENST00000409997 557 ntTSL 4 BASIC17.49■□□□□ 0.39
PMS1P54277 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
PMS1P54277 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC17.49■□□□□ 0.39
PMS1P54277 HIST3H2BA-201ENST00000436555 524 ntBASIC17.49■□□□□ 0.39
PMS1P54277 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PMS1P54277 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC17.49■□□□□ 0.39
PMS1P54277 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms