Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SMARCA1P28370 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SMARCA1P28370 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SMARCA1P28370 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SMARCA1P28370 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC18.15■□□□□ 0.5
SMARCA1P28370 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC18.15■□□□□ 0.5
SMARCA1P28370 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SMARCA1P28370 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SMARCA1P28370 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
SMARCA1P28370 CLK3P2-201ENST00000427566 1453 ntBASIC18.14■□□□□ 0.5
SMARCA1P28370 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
SMARCA1P28370 AC127383.1-201ENST00000444697 1800 ntBASIC18.14■□□□□ 0.5
SMARCA1P28370 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC18.14■□□□□ 0.49
SMARCA1P28370 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC18.14■□□□□ 0.49
SMARCA1P28370 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SMARCA1P28370 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SMARCA1P28370 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC18.14■□□□□ 0.49
SMARCA1P28370 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC18.14■□□□□ 0.49
SMARCA1P28370 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SMARCA1P28370 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SMARCA1P28370 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
SMARCA1P28370 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SMARCA1P28370 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC18.14■□□□□ 0.49
SMARCA1P28370 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC18.14■□□□□ 0.49
SMARCA1P28370 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC18.14■□□□□ 0.49
SMARCA1P28370 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC18.14■□□□□ 0.49
SMARCA1P28370 AC036164.1-201ENST00000570544 333 ntBASIC18.14■□□□□ 0.49
SMARCA1P28370 LINC02084-201ENST00000606069 1096 ntBASIC18.14■□□□□ 0.49
SMARCA1P28370 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC18.14■□□□□ 0.49
SMARCA1P28370 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC18.14■□□□□ 0.49
SMARCA1P28370 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SMARCA1P28370 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SMARCA1P28370 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC18.14■□□□□ 0.49
SMARCA1P28370 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC18.14■□□□□ 0.49
SMARCA1P28370 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
SMARCA1P28370 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SMARCA1P28370 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SMARCA1P28370 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
SMARCA1P28370 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SMARCA1P28370 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
SMARCA1P28370 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SMARCA1P28370 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SMARCA1P28370 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SMARCA1P28370 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SMARCA1P28370 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SMARCA1P28370 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
SMARCA1P28370 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
SMARCA1P28370 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SMARCA1P28370 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SMARCA1P28370 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC18.13■□□□□ 0.49
SMARCA1P28370 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SMARCA1P28370 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
SMARCA1P28370 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SMARCA1P28370 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC18.13■□□□□ 0.49
SMARCA1P28370 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
SMARCA1P28370 AC140912.1-201ENST00000577171 1054 ntBASIC18.13■□□□□ 0.49
SMARCA1P28370 TBCB-211ENST00000589996 724 ntTSL 3 BASIC18.13■□□□□ 0.49
SMARCA1P28370 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SMARCA1P28370 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
SMARCA1P28370 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC18.13■□□□□ 0.49
SMARCA1P28370 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC18.13■□□□□ 0.49
SMARCA1P28370 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SMARCA1P28370 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
SMARCA1P28370 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
SMARCA1P28370 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC18.13■□□□□ 0.49
SMARCA1P28370 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SMARCA1P28370 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC18.13■□□□□ 0.49
SMARCA1P28370 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
SMARCA1P28370 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC18.13■□□□□ 0.49
SMARCA1P28370 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SMARCA1P28370 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SMARCA1P28370 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SMARCA1P28370 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SMARCA1P28370 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SMARCA1P28370 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMARCA1P28370 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
SMARCA1P28370 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC18.12■□□□□ 0.49
SMARCA1P28370 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC18.12■□□□□ 0.49
SMARCA1P28370 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMARCA1P28370 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
SMARCA1P28370 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
SMARCA1P28370 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
SMARCA1P28370 HLA-DQB2-231ENST00000435145 2026 ntBASIC18.12■□□□□ 0.49
SMARCA1P28370 AC105250.1-201ENST00000509378 2057 ntBASIC18.12■□□□□ 0.49
SMARCA1P28370 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMARCA1P28370 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC18.12■□□□□ 0.49
SMARCA1P28370 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC18.12■□□□□ 0.49
SMARCA1P28370 LHX6-205ENST00000464484 666 ntTSL 2 BASIC18.12■□□□□ 0.49
SMARCA1P28370 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
SMARCA1P28370 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SMARCA1P28370 AC027307.3-201ENST00000594262 1100 ntBASIC18.12■□□□□ 0.49
SMARCA1P28370 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC18.12■□□□□ 0.49
SMARCA1P28370 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC18.12■□□□□ 0.49
SMARCA1P28370 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC18.12■□□□□ 0.49
SMARCA1P28370 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
SMARCA1P28370 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMARCA1P28370 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMARCA1P28370 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMARCA1P28370 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
SMARCA1P28370 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms