Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ERCC3P19447 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ERCC3P19447 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
ERCC3P19447 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC18.45■□□□□ 0.54
ERCC3P19447 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
ERCC3P19447 DOC2GP-204ENST00000639052 2548 ntBASIC18.45■□□□□ 0.54
ERCC3P19447 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
ERCC3P19447 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
ERCC3P19447 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
ERCC3P19447 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC18.44■□□□□ 0.54
ERCC3P19447 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
ERCC3P19447 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ERCC3P19447 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ERCC3P19447 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
ERCC3P19447 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
ERCC3P19447 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
ERCC3P19447 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC18.44■□□□□ 0.54
ERCC3P19447 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ERCC3P19447 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
ERCC3P19447 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
ERCC3P19447 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ERCC3P19447 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC18.44■□□□□ 0.54
ERCC3P19447 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC18.44■□□□□ 0.54
ERCC3P19447 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
ERCC3P19447 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC18.44■□□□□ 0.54
ERCC3P19447 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC18.44■□□□□ 0.54
ERCC3P19447 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC18.44■□□□□ 0.54
ERCC3P19447 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC18.44■□□□□ 0.54
ERCC3P19447 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ERCC3P19447 RHOA-206ENST00000454011 889 ntTSL 2 BASIC18.44■□□□□ 0.54
ERCC3P19447 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC18.44■□□□□ 0.54
ERCC3P19447 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC18.44■□□□□ 0.54
ERCC3P19447 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC18.44■□□□□ 0.54
ERCC3P19447 NAA38-206ENST00000576384 424 ntTSL 2 BASIC18.44■□□□□ 0.54
ERCC3P19447 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ERCC3P19447 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC18.44■□□□□ 0.54
ERCC3P19447 TMEM261P1-201ENST00000604899 340 ntBASIC18.44■□□□□ 0.54
ERCC3P19447 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ERCC3P19447 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
ERCC3P19447 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
ERCC3P19447 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ERCC3P19447 AC132872.4-202ENST00000622924 2756 ntBASIC18.44■□□□□ 0.54
ERCC3P19447 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
ERCC3P19447 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC18.43■□□□□ 0.54
ERCC3P19447 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC18.43■□□□□ 0.54
ERCC3P19447 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
ERCC3P19447 CDC14C-201ENST00000428251 1719 ntBASIC18.43■□□□□ 0.54
ERCC3P19447 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
ERCC3P19447 AC006449.5-201ENST00000610658 2098 ntBASIC18.43■□□□□ 0.54
ERCC3P19447 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
ERCC3P19447 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
ERCC3P19447 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC18.43■□□□□ 0.54
ERCC3P19447 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
ERCC3P19447 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
ERCC3P19447 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
ERCC3P19447 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
ERCC3P19447 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC18.43■□□□□ 0.54
ERCC3P19447 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC18.43■□□□□ 0.54
ERCC3P19447 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
ERCC3P19447 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
ERCC3P19447 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC18.43■□□□□ 0.54
ERCC3P19447 FXR1-221ENST00000491674 365 ntTSL 2 BASIC18.43■□□□□ 0.54
ERCC3P19447 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC18.43■□□□□ 0.54
ERCC3P19447 RARRES2P5-201ENST00000564013 466 ntBASIC18.43■□□□□ 0.54
ERCC3P19447 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC18.43■□□□□ 0.54
ERCC3P19447 AL512343.1-201ENST00000605837 169 ntBASIC18.43■□□□□ 0.54
ERCC3P19447 Six3os1_5.1-201ENST00000611000 271 ntBASIC18.43■□□□□ 0.54
ERCC3P19447 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
ERCC3P19447 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
ERCC3P19447 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
ERCC3P19447 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC18.43■□□□□ 0.54
ERCC3P19447 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
ERCC3P19447 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
ERCC3P19447 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC18.43■□□□□ 0.54
ERCC3P19447 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
ERCC3P19447 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
ERCC3P19447 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
ERCC3P19447 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC18.43■□□□□ 0.54
ERCC3P19447 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC18.43■□□□□ 0.54
ERCC3P19447 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
ERCC3P19447 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
ERCC3P19447 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC18.42■□□□□ 0.54
ERCC3P19447 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC18.42■□□□□ 0.54
ERCC3P19447 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
ERCC3P19447 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
ERCC3P19447 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
ERCC3P19447 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
ERCC3P19447 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
ERCC3P19447 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC18.42■□□□□ 0.54
ERCC3P19447 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
ERCC3P19447 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
ERCC3P19447 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
ERCC3P19447 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
ERCC3P19447 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
ERCC3P19447 CLK3P2-201ENST00000427566 1453 ntBASIC18.42■□□□□ 0.54
ERCC3P19447 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
ERCC3P19447 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
ERCC3P19447 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
ERCC3P19447 MIR6799-201ENST00000620297 69 ntBASIC18.42■□□□□ 0.54
ERCC3P19447 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms