Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
SPTA1P02549 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC14.37□□□□□ -0.11
SPTA1P02549 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPTA1P02549 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
SPTA1P02549 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
SPTA1P02549 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPTA1P02549 C1QBPP1-201ENST00000400117 770 ntBASIC14.37□□□□□ -0.11
SPTA1P02549 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPTA1P02549 AL096828.3-201ENST00000615354 462 ntBASIC14.37□□□□□ -0.11
SPTA1P02549 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPTA1P02549 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SPTA1P02549 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SPTA1P02549 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPTA1P02549 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC14.37□□□□□ -0.11
SPTA1P02549 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC14.37□□□□□ -0.11
SPTA1P02549 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SPTA1P02549 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPTA1P02549 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SPTA1P02549 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
SPTA1P02549 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SPTA1P02549 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SPTA1P02549 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SPTA1P02549 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC14.36□□□□□ -0.11
SPTA1P02549 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
SPTA1P02549 PKIG-203ENST00000372887 769 ntTSL 3 BASIC14.36□□□□□ -0.11
SPTA1P02549 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SPTA1P02549 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
SPTA1P02549 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC14.36□□□□□ -0.11
SPTA1P02549 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC14.36□□□□□ -0.11
SPTA1P02549 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC14.36□□□□□ -0.11
SPTA1P02549 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SPTA1P02549 KRT18P66-201ENST00000452970 1269 ntBASIC14.36□□□□□ -0.11
SPTA1P02549 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC14.36□□□□□ -0.11
SPTA1P02549 AL136301.1-201ENST00000615830 422 ntBASIC14.36□□□□□ -0.11
SPTA1P02549 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SPTA1P02549 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
SPTA1P02549 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SPTA1P02549 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SPTA1P02549 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SPTA1P02549 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC14.36□□□□□ -0.11
SPTA1P02549 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SPTA1P02549 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
SPTA1P02549 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
SPTA1P02549 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC14.36□□□□□ -0.11
SPTA1P02549 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
SPTA1P02549 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
SPTA1P02549 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC14.36□□□□□ -0.11
SPTA1P02549 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
SPTA1P02549 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SPTA1P02549 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SPTA1P02549 ATP6V0CP2-201ENST00000469409 207 ntBASIC14.36□□□□□ -0.11
SPTA1P02549 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC14.36□□□□□ -0.11
SPTA1P02549 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SPTA1P02549 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC14.36□□□□□ -0.11
SPTA1P02549 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SPTA1P02549 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SPTA1P02549 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SPTA1P02549 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC14.36□□□□□ -0.11
SPTA1P02549 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC14.36□□□□□ -0.11
SPTA1P02549 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
SPTA1P02549 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SPTA1P02549 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC14.36□□□□□ -0.11
SPTA1P02549 DRD5P1-201ENST00000456605 1438 ntBASIC14.36□□□□□ -0.11
SPTA1P02549 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SPTA1P02549 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SPTA1P02549 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
SPTA1P02549 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SPTA1P02549 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
SPTA1P02549 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SPTA1P02549 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC14.36□□□□□ -0.11
SPTA1P02549 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC14.36□□□□□ -0.11
SPTA1P02549 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC14.36□□□□□ -0.11
SPTA1P02549 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SPTA1P02549 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SPTA1P02549 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC14.35□□□□□ -0.11
SPTA1P02549 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SPTA1P02549 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SPTA1P02549 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SPTA1P02549 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC14.35□□□□□ -0.11
SPTA1P02549 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC14.35□□□□□ -0.11
SPTA1P02549 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC14.35□□□□□ -0.11
SPTA1P02549 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC14.35□□□□□ -0.11
SPTA1P02549 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SPTA1P02549 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
SPTA1P02549 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
SPTA1P02549 DIO1-215ENST00000610607 796 ntTSL 5 BASIC14.35□□□□□ -0.11
SPTA1P02549 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
SPTA1P02549 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC14.35□□□□□ -0.11
SPTA1P02549 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC14.35□□□□□ -0.11
SPTA1P02549 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SPTA1P02549 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
SPTA1P02549 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SPTA1P02549 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
SPTA1P02549 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
SPTA1P02549 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SPTA1P02549 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SPTA1P02549 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
SPTA1P02549 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SPTA1P02549 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC14.35□□□□□ -0.11
SPTA1P02549 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms