Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 PSMD9-210ENST00000544254 1481 ntTSL 213.43□□□□□ -0.262e-12■■■■■ 103.4
SF3B1O75533 AC092123.2-201ENST00000611189 5421 ntBASIC13.41□□□□□ -0.261e-8■■■■■ 103.4
SF3B1O75533 MPDU1-202ENST00000359822 840 ntTSL 313.39□□□□□ -0.271e-8■■■■■ 103.4
SF3B1O75533 RALGDS-203ENST00000372062 3596 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.276e-6■■■■■ 103.4
SF3B1O75533 HERC3-203ENST00000407637 2634 ntTSL 1 (best) BASIC13.39□□□□□ -0.271e-8■■■■■ 103.4
SF3B1O75533 FTX-207ENST00000602576 574 ntTSL 413.39□□□□□ -0.271e-8■■■■■ 103.4
SF3B1O75533 GORASP1-213ENST00000453680 2873 ntTSL 1 (best)13.33□□□□□ -0.286e-6■■■■■ 103.4
SF3B1O75533 COPS5-206ENST00000518747 676 ntTSL 313.33□□□□□ -0.281e-8■■■■■ 103.4
SF3B1O75533 TSSC2-203ENST00000526488 674 ntTSL 313.33□□□□□ -0.282e-12■■■■■ 103.4
SF3B1O75533 TNS1-205ENST00000419504 5921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.281e-8■■■■■ 103.4
SF3B1O75533 TNS1-207ENST00000430930 5900 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.281e-8■■■■■ 103.4
SF3B1O75533 SUCLG1-202ENST00000430989 571 ntTSL 413.31□□□□□ -0.286e-6■■■■■ 103.4
SF3B1O75533 CASS4-202ENST00000434344 2888 ntTSL 2 BASIC13.3□□□□□ -0.288e-7■■■■■ 103.4
SF3B1O75533 UBE2Q1-203ENST00000474181 524 ntTSL 213.29□□□□□ -0.282e-6■■■■■ 103.4
SF3B1O75533 ANXA7-201ENST00000372919 2174 ntTSL 1 (best)13.27□□□□□ -0.282e-6■■■■■ 103.4
SF3B1O75533 EFCAB2-201ENST00000366521 860 ntTSL 213.27□□□□□ -0.296e-6■■■■■ 103.4
SF3B1O75533 SEC14L1-203ENST00000431431 2504 ntTSL 2 BASIC13.25□□□□□ -0.292e-12■■■■■ 103.4
SF3B1O75533 ATP6V1D-210ENST00000555474 1102 ntTSL 5 BASIC13.22□□□□□ -0.296e-6■■■■■ 103.4
SF3B1O75533 ATP6V1D-209ENST00000555431 1085 ntTSL 5 BASIC13.22□□□□□ -0.296e-6■■■■■ 103.4
SF3B1O75533 NAA60-236ENST00000577013 575 ntTSL 1 (best) BASIC13.21□□□□□ -0.296e-6■■■■■ 103.4
SF3B1O75533 REXO5-206ENST00000563617 813 ntTSL 513.19□□□□□ -0.31e-8■■■■■ 103.4
SF3B1O75533 RMND5B-210ENST00000515098 4066 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.36e-6■■■■■ 103.4
SF3B1O75533 MPDU1-227ENST00000585217 438 ntTSL 313.15□□□□□ -0.31e-8■■■■■ 103.4
SF3B1O75533 LIG3-209ENST00000586435 588 ntTSL 513.14□□□□□ -0.316e-6■■■■■ 103.4
SF3B1O75533 RENBP-208ENST00000464227 424 ntTSL 513.13□□□□□ -0.316e-6■■■■■ 103.4
SF3B1O75533 PNP-201ENST00000361505 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.311e-8■■■■■ 103.4
SF3B1O75533 HDAC8-201ENST00000373554 833 ntTSL 2 BASIC13.11□□□□□ -0.311e-8■■■■■ 103.4
SF3B1O75533 NAA60-219ENST00000573345 608 ntTSL 413.1□□□□□ -0.316e-6■■■■■ 103.4
SF3B1O75533 MKL1-205ENST00000407029 4091 ntTSL 1 (best) BASIC13.09□□□□□ -0.316e-6■■■■■ 103.4
SF3B1O75533 ATP5G2-202ENST00000394349 878 ntTSL 2 BASIC13.07□□□□□ -0.326e-6■■■■■ 103.4
SF3B1O75533 SP100-203ENST00000409112 2198 ntTSL 1 (best) BASIC13.06□□□□□ -0.326e-6■■■■■ 103.4
SF3B1O75533 OGFR-202ENST00000370461 4506 ntAPPRIS ALT2 TSL 2 BASIC13.06□□□□□ -0.321e-8■■■■■ 103.4
SF3B1O75533 SLC25A25-204ENST00000373069 3376 ntTSL 5 BASIC13.05□□□□□ -0.326e-6■■■■■ 103.4
SF3B1O75533 AXIN1-202ENST00000354866 3324 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.326e-6■■■■■ 103.4
SF3B1O75533 BRF2-201ENST00000220659 2603 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.326e-6■■■■■ 103.4
SF3B1O75533 HS6ST1-201ENST00000259241 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.326e-6■■■■■ 103.4
SF3B1O75533 EFCAB2-213ENST00000497591 1201 ntTSL 513.01□□□□□ -0.336e-6■■■■■ 103.4
SF3B1O75533 CDKAL1-203ENST00000476517 840 ntTSL 213□□□□□ -0.336e-6■■■■■ 103.4
SF3B1O75533 BABAM2-207ENST00000436924 874 ntTSL 312.99□□□□□ -0.336e-6■■■■■ 103.4
SF3B1O75533 XPO6-205ENST00000564337 605 ntTSL 512.97□□□□□ -0.331e-8■■■■■ 103.4
SF3B1O75533 SLC25A25-205ENST00000432073 3678 ntTSL 1 (best) BASIC12.94□□□□□ -0.346e-6■■■■■ 103.4
SF3B1O75533 PIGG-201ENST00000310340 3203 ntAPPRIS P3 TSL 2 BASIC12.93□□□□□ -0.341e-8■■■■■ 103.4
SF3B1O75533 HERC3-207ENST00000452979 887 ntTSL 312.93□□□□□ -0.341e-8■■■■■ 103.4
SF3B1O75533 PRPF8-206ENST00000572723 959 ntTSL 212.91□□□□□ -0.341e-8■■■■■ 103.4
SF3B1O75533 C7orf49-207ENST00000477820 531 ntTSL 312.88□□□□□ -0.356e-6■■■■■ 103.4
SF3B1O75533 C7orf49-206ENST00000472428 723 ntTSL 212.88□□□□□ -0.356e-6■■■■■ 103.4
SF3B1O75533 NAA60-212ENST00000572131 558 ntTSL 512.87□□□□□ -0.356e-6■■■■■ 103.4
SF3B1O75533 NAA60-209ENST00000571107 561 ntTSL 412.87□□□□□ -0.356e-6■■■■■ 103.4
SF3B1O75533 STK11IP-204ENST00000456909 3615 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.361e-8■■■■■ 103.4
SF3B1O75533 PLEKHH1-202ENST00000557971 5555 ntTSL 1 (best)12.83□□□□□ -0.361e-8■■■■■ 103.4
SF3B1O75533 CASS4-201ENST00000360314 2619 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.368e-7■■■■■ 103.4
SF3B1O75533 PIGG-203ENST00000453061 3218 ntAPPRIS ALT1 TSL 1 (best) BASIC12.75□□□□□ -0.371e-8■■■■■ 103.4
SF3B1O75533 GOT2-206ENST00000564400 983 ntTSL 312.75□□□□□ -0.376e-6■■■■■ 103.4
SF3B1O75533 NDST1-207ENST00000523767 3449 ntTSL 2 BASIC12.72□□□□□ -0.376e-6■■■■■ 103.4
SF3B1O75533 TRIQK-219ENST00000523580 1630 ntTSL 2 BASIC12.72□□□□□ -0.376e-6■■■■■ 103.4
SF3B1O75533 XPO6-204ENST00000563138 562 ntTSL 212.72□□□□□ -0.371e-8■■■■■ 103.4
SF3B1O75533 PDHX-202ENST00000430469 952 ntTSL 2 BASIC12.71□□□□□ -0.376e-6■■■■■ 103.4
SF3B1O75533 SCAP-208ENST00000448217 550 ntTSL 412.7□□□□□ -0.384e-6■■■■■ 103.4
SF3B1O75533 C2orf69-201ENST00000319974 3728 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.386e-6■■■■■ 103.4
SF3B1O75533 WNK4-204ENST00000591448 3909 ntTSL 1 (best)12.7□□□□□ -0.386e-6■■■■■ 103.4
SF3B1O75533 RNF207-209ENST00000496676 3020 ntTSL 212.66□□□□□ -0.381e-8■■■■■ 103.4
SF3B1O75533 ZNF268-211ENST00000541975 572 ntTSL 412.65□□□□□ -0.386e-6■■■■■ 103.4
SF3B1O75533 ZNF268-203ENST00000500625 717 ntTSL 312.64□□□□□ -0.396e-6■■■■■ 103.4
SF3B1O75533 NAA60-207ENST00000570551 673 ntTSL 312.63□□□□□ -0.396e-6■■■■■ 103.4
SF3B1O75533 SMARCAL1-201ENST00000357276 3271 ntAPPRIS P2 TSL 2 BASIC12.6□□□□□ -0.391e-8■■■■■ 103.4
SF3B1O75533 POMGNT1-208ENST00000485714 2906 ntTSL 212.57□□□□□ -0.41e-8■■■■■ 103.4
SF3B1O75533 ASIC4-204ENST00000473709 613 ntTSL 212.57□□□□□ -0.46e-6■■■■■ 103.4
SF3B1O75533 UBE2Q1-205ENST00000483639 694 ntTSL 312.56□□□□□ -0.42e-6■■■■■ 103.4
SF3B1O75533 SLC25A25-203ENST00000373068 3431 ntTSL 1 (best) BASIC12.56□□□□□ -0.46e-6■■■■■ 103.4
SF3B1O75533 TRIQK-202ENST00000517540 1753 ntTSL 312.55□□□□□ -0.46e-6■■■■■ 103.4
SF3B1O75533 RECQL5-204ENST00000423245 3576 ntTSL 1 (best) BASIC12.55□□□□□ -0.41e-8■■■■■ 103.4
SF3B1O75533 GANAB-213ENST00000534422 702 ntTSL 512.54□□□□□ -0.41e-8■■■■■ 103.4
SF3B1O75533 ZCRB1-205ENST00000552673 907 ntTSL 3 BASIC12.52□□□□□ -0.416e-6■■■■■ 103.4
SF3B1O75533 COG2-203ENST00000468893 2784 ntTSL 212.5□□□□□ -0.416e-6■■■■■ 103.4
SF3B1O75533 SUCLG1-203ENST00000442240 568 ntTSL 512.49□□□□□ -0.416e-6■■■■■ 103.4
SF3B1O75533 CBFA2T3-208ENST00000566868 284 ntTSL 512.48□□□□□ -0.411e-8■■■■■ 103.4
SF3B1O75533 NAA60-224ENST00000574328 552 ntTSL 412.46□□□□□ -0.416e-6■■■■■ 103.4
SF3B1O75533 REXO5-213ENST00000567297 753 ntTSL 312.43□□□□□ -0.421e-8■■■■■ 103.4
SF3B1O75533 TBC1D4-203ENST00000413735 847 ntTSL 512.43□□□□□ -0.426e-6■■■■■ 103.4
SF3B1O75533 MED29-207ENST00000615911 3565 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.422e-12■■■■■ 103.4
SF3B1O75533 FBXL2-207ENST00000451636 1859 ntTSL 212.42□□□□□ -0.426e-6■■■■■ 103.4
SF3B1O75533 AC109446.3-201ENST00000567344 641 ntTSL 3 BASIC12.4□□□□□ -0.425e-6■■■■■ 103.4
SF3B1O75533 LRP8-211ENST00000496580 507 ntTSL 212.39□□□□□ -0.432e-7■■■■■ 103.4
SF3B1O75533 MPDU1-205ENST00000570458 591 ntTSL 312.39□□□□□ -0.431e-8■■■■■ 103.4
SF3B1O75533 FBXL2-201ENST00000283627 2152 ntTSL 512.39□□□□□ -0.436e-6■■■■■ 103.4
SF3B1O75533 TACC1-201ENST00000276520 6513 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.431e-8■■■■■ 103.4
SF3B1O75533 ETFDH-201ENST00000307738 1903 ntTSL 2 BASIC12.37□□□□□ -0.436e-6■■■■■ 103.4
SF3B1O75533 SCAP-214ENST00000495603 706 ntTSL 212.36□□□□□ -0.431e-8■■■■■ 103.4
SF3B1O75533 FAM78A-202ENST00000372269 3659 ntTSL 1 (best) BASIC12.35□□□□□ -0.431e-8■■■■■ 103.4
SF3B1O75533 RECQL4-203ENST00000529424 324 ntTSL 212.35□□□□□ -0.432e-12■■■■■ 103.4
SF3B1O75533 AFMID-208ENST00000588800 647 ntTSL 2 BASIC12.34□□□□□ -0.436e-6■■■■■ 103.4
SF3B1O75533 AGK-201ENST00000355413 3849 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.441e-8■■■■■ 103.4
SF3B1O75533 ETFDH-206ENST00000511912 3282 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.446e-6■■■■■ 103.4
SF3B1O75533 FBXL2-203ENST00000422741 2223 ntTSL 512.31□□□□□ -0.446e-6■■■■■ 103.4
SF3B1O75533 SHPRH-207ENST00000519632 5245 ntTSL 512.3□□□□□ -0.446e-6■■■■■ 103.4
SF3B1O75533 SHPRH-202ENST00000367503 5237 ntTSL 5 BASIC12.3□□□□□ -0.446e-6■■■■■ 103.4
SF3B1O75533 LRRD1-202ENST00000422722 3511 ntTSL 212.26□□□□□ -0.456e-6■■■■■ 103.4
SF3B1O75533 SLC25A25-201ENST00000373064 3474 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.456e-6■■■■■ 103.4
SF3B1O75533 LARP4-206ENST00000518444 2853 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.453e-6■■■■■ 103.4
SF3B1O75533 ARMC8-201ENST00000358441 3181 ntTSL 1 (best) BASIC12.24□□□□□ -0.456e-6■■■■■ 103.4
Retrieved 100 of 46,956 protein–RNA pairs in 1981.3 ms