RNA–Protein interactions for RNA: ENST00000357276.8

SMARCAL1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1, humanhuman

APPRIS P2 TSL 2 BASIC

Gene SMARCAL1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1-201ENST00000357276 NISCHQ9Y2I1 1504 aa24.26■■□□□ 1.47
SMARCAL1-201ENST00000357276 CCDC180Q9P1Z9 1646 aa21.32■■□□□ 1
SMARCAL1-201ENST00000357276 HRCP23327 699 aa20.49■□□□□ 0.87
SMARCAL1-201ENST00000357276 SHROOM4Q9ULL8 1493 aa20.44■□□□□ 0.86
SMARCAL1-201ENST00000357276 ZCCHC6Q5VYS8 1495 aaKnown RBP20.42■□□□□ 0.86
SMARCAL1-201ENST00000357276 MYO15BQ96JP2 1530 aa20.3■□□□□ 0.84
SMARCAL1-201ENST00000357276 SUPT5HO00267 1087 aaKnown RBP20.28■□□□□ 0.84
SMARCAL1-201ENST00000357276 DCAF1Q9Y4B6 1507 aa20.23■□□□□ 0.83
SMARCAL1-201ENST00000357276 CHIC1Q5VXU3 224 aa20.14■□□□□ 0.81
SMARCAL1-201ENST00000357276 PCGF6Q9BYE7 350 aa19.97■□□□□ 0.79
SMARCAL1-201ENST00000357276 PPARGC1BQ86YN6 1023 aaKnown RBP19.88■□□□□ 0.77
SMARCAL1-201ENST00000357276 NACADO15069 1562 aa19.76■□□□□ 0.75
SMARCAL1-201ENST00000357276 ABCC9O60706 1549 aa19.74■□□□□ 0.75
SMARCAL1-201ENST00000357276 DCAF8L2P0C7V8 631 aa19.58■□□□□ 0.72
SMARCAL1-201ENST00000357276 TRIM26Q12899 539 aaPredicted RBP19.55■□□□□ 0.72
SMARCAL1-201ENST00000357276 RB1CC1Q8TDY2 1594 aa19.54■□□□□ 0.72
SMARCAL1-201ENST00000357276 PELP1Q8IZL8 1130 aaKnown RBP19.53■□□□□ 0.72
SMARCAL1-201ENST00000357276 LOC105371045A0A1W2PR82 267 aa19.49■□□□□ 0.71
SMARCAL1-201ENST00000357276 ZEB1P37275 1124 aaPredicted RBP19.38■□□□□ 0.69
SMARCAL1-201ENST00000357276 SCRIBQ14160 1630 aa19.34■□□□□ 0.69
SMARCAL1-201ENST00000357276 SCAF1Q9H7N4 1312 aaKnown RBP19.22■□□□□ 0.67
SMARCAL1-201ENST00000357276 UNC13AQ9UPW8 1703 aa19.2■□□□□ 0.66
SMARCAL1-201ENST00000357276 RSF1Q96T23 1441 aaPredicted RBP19.01■□□□□ 0.63
SMARCAL1-201ENST00000357276 BICRAQ9NZM4 1560 aa18.93■□□□□ 0.62
SMARCAL1-201ENST00000357276 TRIM41Q8WV44 630 aa18.89■□□□□ 0.61
SMARCAL1-201ENST00000357276 ACIN1Q9UKV3 1341 aaKnown RBP18.84■□□□□ 0.61
SMARCAL1-201ENST00000357276 BAZ1AQ9NRL2 1556 aaPredicted RBP18.76■□□□□ 0.59
SMARCAL1-201ENST00000357276 MYT1Q01538 1121 aa18.74■□□□□ 0.59
SMARCAL1-201ENST00000357276 NEUROD1Q13562 356 aa18.74■□□□□ 0.59
SMARCAL1-201ENST00000357276 CECR2Q9BXF3 1484 aa18.71■□□□□ 0.59
SMARCAL1-201ENST00000357276 FAM9AQ8IZU1 332 aaPredicted RBP18.67■□□□□ 0.58
SMARCAL1-201ENST00000357276 MROH2BQ7Z745 1585 aa18.67■□□□□ 0.58
SMARCAL1-201ENST00000357276 SMARCA4P51532 1647 aa18.67■□□□□ 0.58
SMARCAL1-201ENST00000357276 EIF4G1Q04637 1599 aaKnown RBP18.59■□□□□ 0.57
SMARCAL1-201ENST00000357276 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.57■□□□□ 0.56
SMARCAL1-201ENST00000357276 GTF3C3Q9Y5Q9 886 aa18.57■□□□□ 0.56
SMARCAL1-201ENST00000357276 CENPBP07199 599 aaPredicted RBP18.55■□□□□ 0.56
SMARCAL1-201ENST00000357276 DIEXFQ68CQ4 756 aaKnown RBP18.55■□□□□ 0.56
SMARCAL1-201ENST00000357276 PEG3Q9GZU2 1588 aa18.55■□□□□ 0.56
SMARCAL1-201ENST00000357276 WIZO95785 1651 aa18.54■□□□□ 0.56
SMARCAL1-201ENST00000357276 WRNQ14191 1432 aaPredicted RBP eCLIP18.53■□□□□ 0.56
SMARCAL1-201ENST00000357276 CCER1Q8TC90 406 aaPredicted RBP18.53■□□□□ 0.56
SMARCAL1-201ENST00000357276 PABPN1Q86U42 306 aaKnown RBP eCLIP18.51■□□□□ 0.55
SMARCAL1-201ENST00000357276 TOP2AP11388 1531 aaKnown RBP18.44■□□□□ 0.54
SMARCAL1-201ENST00000357276 EHMT2Q96KQ7 1210 aa18.41■□□□□ 0.54
SMARCAL1-201ENST00000357276 SMARCA2P51531 1590 aa18.36■□□□□ 0.53
SMARCAL1-201ENST00000357276 ZNF316A6NFI3 1004 aaPredicted RBP18.29■□□□□ 0.52
SMARCAL1-201ENST00000357276 CEP162Q5TB80 1403 aa18.29■□□□□ 0.52
SMARCAL1-201ENST00000357276 ATAD2BQ9ULI0 1458 aa18.28■□□□□ 0.52
SMARCAL1-201ENST00000357276 TNIKQ9UKE5 1360 aa18.25■□□□□ 0.51
SMARCAL1-201ENST00000357276 HMGXB3Q12766 1538 aa18.22■□□□□ 0.51
SMARCAL1-201ENST00000357276 CCDC88BA6NC98 1476 aa18.22■□□□□ 0.51
SMARCAL1-201ENST00000357276 ABCC8Q09428 1581 aa18.18■□□□□ 0.5
SMARCAL1-201ENST00000357276 NCAPD3P42695 1498 aa18.18■□□□□ 0.5
SMARCAL1-201ENST00000357276 BAZ1BQ9UIG0 1483 aaKnown RBP18.16■□□□□ 0.5
SMARCAL1-201ENST00000357276 EEA1Q15075 1411 aa18.16■□□□□ 0.5
SMARCAL1-201ENST00000357276 SOGA1O94964 1423 aa18.11■□□□□ 0.49
SMARCAL1-201ENST00000357276 MIER1Q8N108 512 aa18.1■□□□□ 0.49
SMARCAL1-201ENST00000357276 GOLGA3Q08378 1498 aa18.03■□□□□ 0.48
SMARCAL1-201ENST00000357276 YTHDC1Q96MU7 727 aaKnown RBP18.02■□□□□ 0.48
SMARCAL1-201ENST00000357276 CC2D2AQ9P2K1 1620 aa18.02■□□□□ 0.48
SMARCAL1-201ENST00000357276 RUSC2Q8N2Y8 1516 aa18.01■□□□□ 0.47
SMARCAL1-201ENST00000357276 TTBK1Q5TCY1 1321 aaPredicted RBP18■□□□□ 0.47
SMARCAL1-201ENST00000357276 CSRNP3Q8WYN3 585 aa17.99■□□□□ 0.47
SMARCAL1-201ENST00000357276 CLSPNQ9HAW4 1339 aa17.96■□□□□ 0.47
SMARCAL1-201ENST00000357276 KIF21BO75037 1637 aa17.96■□□□□ 0.46
SMARCAL1-201ENST00000357276 PRDM2Q13029 1718 aa17.88■□□□□ 0.45
SMARCAL1-201ENST00000357276 CEP164Q9UPV0 1460 aa17.87■□□□□ 0.45
SMARCAL1-201ENST00000357276 UBTFP17480 764 aaKnown RBP17.86■□□□□ 0.45
SMARCAL1-201ENST00000357276 VPS8Q8N3P4 1428 aa17.85■□□□□ 0.45
SMARCAL1-201ENST00000357276 CLIP1P30622 1438 aa17.82■□□□□ 0.44
SMARCAL1-201ENST00000357276 SUPT16HQ9Y5B9 1047 aaKnown RBP17.81■□□□□ 0.44
SMARCAL1-201ENST00000357276 HNRNPUL2Q1KMD3 747 aaKnown RBP17.8■□□□□ 0.44
SMARCAL1-201ENST00000357276 SYNJ1O43426 1573 aa17.77■□□□□ 0.43
SMARCAL1-201ENST00000357276 CFTRP13569 1480 aa17.77■□□□□ 0.43
SMARCAL1-201ENST00000357276 DHX57Q6P158 1386 aaKnown RBP17.73■□□□□ 0.43
SMARCAL1-201ENST00000357276 TSHZ2Q9NRE2 1034 aa17.69■□□□□ 0.42
SMARCAL1-201ENST00000357276 BIVM-ERCC5R4GMW8 1640 aa17.66■□□□□ 0.42
SMARCAL1-201ENST00000357276 RAPGEF2Q9Y4G8 1499 aa17.65■□□□□ 0.42
SMARCAL1-201ENST00000357276 CUX2O14529 1486 aa17.64■□□□□ 0.42
SMARCAL1-201ENST00000357276 ANP32EQ9BTT0 268 aa17.64■□□□□ 0.41
SMARCAL1-201ENST00000357276 CADPSQ9ULU8 1353 aa17.63■□□□□ 0.41
SMARCAL1-201ENST00000357276 TOP2BQ02880 1626 aa17.62■□□□□ 0.41
SMARCAL1-201ENST00000357276 LAMC3Q9Y6N6 1575 aa17.6■□□□□ 0.41
SMARCAL1-201ENST00000357276 RRBP1Q9P2E9 1410 aaKnown RBP17.57■□□□□ 0.4
SMARCAL1-201ENST00000357276 APLP2Q06481 763 aa17.56■□□□□ 0.4
SMARCAL1-201ENST00000357276 ERICH3Q5RHP9 1530 aa17.55■□□□□ 0.4
SMARCAL1-201ENST00000357276 ARAP1Q96P48 1450 aa17.54■□□□□ 0.4
SMARCAL1-201ENST00000357276 PRXQ9BXM0 1461 aa17.48■□□□□ 0.39
SMARCAL1-201ENST00000357276 CUX1P39880 1505 aa17.48■□□□□ 0.39
SMARCAL1-201ENST00000357276 FANCD2Q9BXW9 1451 aa17.43■□□□□ 0.38
SMARCAL1-201ENST00000357276 MAPKBP1O60336 1514 aa17.43■□□□□ 0.38
SMARCAL1-201ENST00000357276 KANK4Q5T7N3 995 aaPredicted RBP17.42■□□□□ 0.38
SMARCAL1-201ENST00000357276 BCL11AQ9H165 835 aa17.42■□□□□ 0.38
SMARCAL1-201ENST00000357276 DNMBPQ6XZF7 1577 aa17.38■□□□□ 0.37
SMARCAL1-201ENST00000357276 KCNH8Q96L42 1107 aa17.38■□□□□ 0.37
SMARCAL1-201ENST00000357276 CCNB3Q8WWL7 1395 aa17.37■□□□□ 0.37
SMARCAL1-201ENST00000357276 NESP48681 1621 aa17.37■□□□□ 0.37
SMARCAL1-201ENST00000357276 PDS5BQ9NTI5 1447 aa17.36■□□□□ 0.37
SMARCAL1-201ENST00000357276 KIF21AQ7Z4S6 1674 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms