Protein–RNA interactions for Protein: Q9Y296

TRAPPC4, Trafficking protein particle complex subunit 4, humanhuman

Predictions only

Length 219 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4Q9Y296 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRAPPC4Q9Y296 AC024267.1-201ENST00000582320 895 ntBASIC14.68□□□□□ -0.06
TRAPPC4Q9Y296 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC14.68□□□□□ -0.06
TRAPPC4Q9Y296 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC14.68□□□□□ -0.06
TRAPPC4Q9Y296 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
TRAPPC4Q9Y296 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
TRAPPC4Q9Y296 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRAPPC4Q9Y296 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRAPPC4Q9Y296 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRAPPC4Q9Y296 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRAPPC4Q9Y296 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC14.68□□□□□ -0.06
TRAPPC4Q9Y296 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRAPPC4Q9Y296 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC14.68□□□□□ -0.06
TRAPPC4Q9Y296 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRAPPC4Q9Y296 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
TRAPPC4Q9Y296 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
TRAPPC4Q9Y296 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
TRAPPC4Q9Y296 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC14.68□□□□□ -0.06
TRAPPC4Q9Y296 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRAPPC4Q9Y296 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
TRAPPC4Q9Y296 AL109954.1-202ENST00000564051 2148 ntBASIC14.68□□□□□ -0.06
TRAPPC4Q9Y296 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC14.68□□□□□ -0.06
TRAPPC4Q9Y296 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC14.68□□□□□ -0.06
TRAPPC4Q9Y296 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRAPPC4Q9Y296 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC14.68□□□□□ -0.06
TRAPPC4Q9Y296 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 AC142381.1-201ENST00000426099 345 ntBASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 AP006288.1-201ENST00000446065 395 ntBASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 AC004835.2-201ENST00000603762 682 ntBASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 AC055717.3-201ENST00000622967 595 ntBASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 BANP-203ENST00000393207 2438 ntTSL 2 BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 LINC01101-201ENST00000622953 1884 ntBASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRAPPC4Q9Y296 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
TRAPPC4Q9Y296 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRAPPC4Q9Y296 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC14.66□□□□□ -0.06
TRAPPC4Q9Y296 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TRAPPC4Q9Y296 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC14.66□□□□□ -0.06
TRAPPC4Q9Y296 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC14.66□□□□□ -0.06
TRAPPC4Q9Y296 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRAPPC4Q9Y296 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TRAPPC4Q9Y296 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRAPPC4Q9Y296 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TRAPPC4Q9Y296 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TRAPPC4Q9Y296 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TRAPPC4Q9Y296 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRAPPC4Q9Y296 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRAPPC4Q9Y296 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
TRAPPC4Q9Y296 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC14.66□□□□□ -0.06
TRAPPC4Q9Y296 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
TRAPPC4Q9Y296 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRAPPC4Q9Y296 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC14.66□□□□□ -0.06
TRAPPC4Q9Y296 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TRAPPC4Q9Y296 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRAPPC4Q9Y296 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRAPPC4Q9Y296 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC14.66□□□□□ -0.06
TRAPPC4Q9Y296 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRAPPC4Q9Y296 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
TRAPPC4Q9Y296 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
TRAPPC4Q9Y296 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC14.66□□□□□ -0.06
TRAPPC4Q9Y296 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRAPPC4Q9Y296 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms