Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC20.06■□□□□ 0.8
SCN11AQ9UI33 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC20.06■□□□□ 0.8
SCN11AQ9UI33 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC20.06■□□□□ 0.8
SCN11AQ9UI33 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SCN11AQ9UI33 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SCN11AQ9UI33 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.05■□□□□ 0.8
SCN11AQ9UI33 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SCN11AQ9UI33 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SCN11AQ9UI33 AMT-224ENST00000635808 1610 ntTSL 5 BASIC20.05■□□□□ 0.8
SCN11AQ9UI33 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SCN11AQ9UI33 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC20.05■□□□□ 0.8
SCN11AQ9UI33 ILF3-AS1-201ENST00000591501 1983 ntBASIC20.05■□□□□ 0.8
SCN11AQ9UI33 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC20.05■□□□□ 0.8
SCN11AQ9UI33 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC20.05■□□□□ 0.8
SCN11AQ9UI33 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC20.05■□□□□ 0.8
SCN11AQ9UI33 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
SCN11AQ9UI33 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SCN11AQ9UI33 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SCN11AQ9UI33 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
SCN11AQ9UI33 MIR663B-201ENST00000408361 115 ntBASIC20.05■□□□□ 0.8
SCN11AQ9UI33 AC004066.1-201ENST00000502488 802 ntBASIC20.05■□□□□ 0.8
SCN11AQ9UI33 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SCN11AQ9UI33 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC20.05■□□□□ 0.8
SCN11AQ9UI33 SAMD11P1-201ENST00000571429 661 ntBASIC20.05■□□□□ 0.8
SCN11AQ9UI33 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC20.05■□□□□ 0.8
SCN11AQ9UI33 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SCN11AQ9UI33 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC20.05■□□□□ 0.8
SCN11AQ9UI33 KC6-205ENST00000599934 556 ntTSL 4 BASIC20.05■□□□□ 0.8
SCN11AQ9UI33 AL008638.5-201ENST00000623814 1298 ntBASIC20.05■□□□□ 0.8
SCN11AQ9UI33 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC20.05■□□□□ 0.8
SCN11AQ9UI33 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SCN11AQ9UI33 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
SCN11AQ9UI33 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SCN11AQ9UI33 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SCN11AQ9UI33 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SCN11AQ9UI33 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SCN11AQ9UI33 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC20.04■□□□□ 0.8
SCN11AQ9UI33 AC009090.5-201ENST00000624886 2285 ntBASIC20.04■□□□□ 0.8
SCN11AQ9UI33 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SCN11AQ9UI33 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SCN11AQ9UI33 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SCN11AQ9UI33 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SCN11AQ9UI33 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC20.04■□□□□ 0.8
SCN11AQ9UI33 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC20.04■□□□□ 0.8
SCN11AQ9UI33 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC20.04■□□□□ 0.8
SCN11AQ9UI33 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
SCN11AQ9UI33 PGGT1BP2-201ENST00000398621 1028 ntBASIC20.04■□□□□ 0.8
SCN11AQ9UI33 AC104306.2-201ENST00000451877 341 ntBASIC20.04■□□□□ 0.8
SCN11AQ9UI33 TBCB-211ENST00000589996 724 ntTSL 3 BASIC20.04■□□□□ 0.8
SCN11AQ9UI33 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SCN11AQ9UI33 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC20.04■□□□□ 0.8
SCN11AQ9UI33 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SCN11AQ9UI33 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SCN11AQ9UI33 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SCN11AQ9UI33 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC20.04■□□□□ 0.8
SCN11AQ9UI33 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SCN11AQ9UI33 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
SCN11AQ9UI33 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC20.03■□□□□ 0.8
SCN11AQ9UI33 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SCN11AQ9UI33 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SCN11AQ9UI33 AGER-203ENST00000375065 665 ntTSL 2 BASIC20.03■□□□□ 0.8
SCN11AQ9UI33 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC20.03■□□□□ 0.8
SCN11AQ9UI33 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SCN11AQ9UI33 AC091804.1-201ENST00000486888 567 ntBASIC20.03■□□□□ 0.8
SCN11AQ9UI33 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
SCN11AQ9UI33 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC20.03■□□□□ 0.8
SCN11AQ9UI33 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
SCN11AQ9UI33 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SCN11AQ9UI33 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SCN11AQ9UI33 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC20.03■□□□□ 0.8
SCN11AQ9UI33 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SCN11AQ9UI33 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC20.03■□□□□ 0.8
SCN11AQ9UI33 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
SCN11AQ9UI33 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC20.03■□□□□ 0.8
SCN11AQ9UI33 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC20.03■□□□□ 0.8
SCN11AQ9UI33 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SCN11AQ9UI33 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SCN11AQ9UI33 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
SCN11AQ9UI33 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
SCN11AQ9UI33 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC20.03■□□□□ 0.8
SCN11AQ9UI33 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC20.03■□□□□ 0.8
SCN11AQ9UI33 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC20.03■□□□□ 0.8
SCN11AQ9UI33 EEF1DP1-201ENST00000585891 896 ntBASIC20.03■□□□□ 0.8
SCN11AQ9UI33 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC20.03■□□□□ 0.8
SCN11AQ9UI33 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
SCN11AQ9UI33 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.8
SCN11AQ9UI33 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SCN11AQ9UI33 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC20.02■□□□□ 0.8
SCN11AQ9UI33 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC20.02■□□□□ 0.8
SCN11AQ9UI33 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
SCN11AQ9UI33 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SCN11AQ9UI33 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC20.02■□□□□ 0.8
SCN11AQ9UI33 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
SCN11AQ9UI33 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SCN11AQ9UI33 LSM5-207ENST00000410044 687 ntTSL 3 BASIC20.02■□□□□ 0.8
SCN11AQ9UI33 HOMER2P2-201ENST00000451621 847 ntBASIC20.02■□□□□ 0.8
SCN11AQ9UI33 Z93015.1-201ENST00000451718 390 ntBASIC20.02■□□□□ 0.8
SCN11AQ9UI33 AL391280.1-201ENST00000506969 1062 ntBASIC20.02■□□□□ 0.8
SCN11AQ9UI33 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SCN11AQ9UI33 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms