Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 LBX2-201ENST00000341396 886 ntTSL 3 BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 MGST3-203ENST00000367885 680 ntTSL 2 BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 C1QBPP1-201ENST00000400117 770 ntBASIC16.31■□□□□ 0.2
TDP1Q9NUW8 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 VDAC1P7-201ENST00000462417 847 ntBASIC16.31■□□□□ 0.2
TDP1Q9NUW8 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 KRT18P43-201ENST00000469825 1281 ntBASIC16.31■□□□□ 0.2
TDP1Q9NUW8 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 PTP4A1P2-201ENST00000546033 454 ntBASIC16.31■□□□□ 0.2
TDP1Q9NUW8 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 APRT-204ENST00000563655 709 ntTSL 5 BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 AC000095.1-201ENST00000603208 874 ntBASIC16.31■□□□□ 0.2
TDP1Q9NUW8 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 LRRFIP1P1-201ENST00000498774 2246 ntBASIC16.31■□□□□ 0.2
TDP1Q9NUW8 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 AC011477.6-201ENST00000604980 1927 ntBASIC16.31■□□□□ 0.2
TDP1Q9NUW8 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC16.31■□□□□ 0.2
TDP1Q9NUW8 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 AL121723.1-201ENST00000445194 1519 ntBASIC16.3■□□□□ 0.2
TDP1Q9NUW8 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 CMC2-214ENST00000565925 640 ntTSL 5 BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 CROCCP1-201ENST00000426910 5675 ntBASIC16.3■□□□□ 0.2
TDP1Q9NUW8 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC16.3■□□□□ 0.2
TDP1Q9NUW8 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms