Protein–RNA interactions for Protein: Q9BXA9

SALL3, Sal-like protein 3, humanhuman

Predictions only

Length 1,300 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SALL3Q9BXA9 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SALL3Q9BXA9 HNRNPA3P1-201ENST00000401429 1139 ntBASIC19.22■□□□□ 0.67
SALL3Q9BXA9 HNRNPA3P5-201ENST00000455201 833 ntBASIC19.22■□□□□ 0.67
SALL3Q9BXA9 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC19.22■□□□□ 0.67
SALL3Q9BXA9 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC19.22■□□□□ 0.67
SALL3Q9BXA9 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC19.22■□□□□ 0.67
SALL3Q9BXA9 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC19.22■□□□□ 0.67
SALL3Q9BXA9 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC19.22■□□□□ 0.67
SALL3Q9BXA9 AC004461.2-201ENST00000629517 803 ntBASIC19.22■□□□□ 0.67
SALL3Q9BXA9 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC19.22■□□□□ 0.67
SALL3Q9BXA9 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC19.22■□□□□ 0.67
SALL3Q9BXA9 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
SALL3Q9BXA9 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC19.22■□□□□ 0.67
SALL3Q9BXA9 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC19.21■□□□□ 0.67
SALL3Q9BXA9 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
SALL3Q9BXA9 TP73-209ENST00000603362 1668 ntTSL 5 BASIC19.21■□□□□ 0.67
SALL3Q9BXA9 AC126365.1-201ENST00000578585 1514 ntBASIC19.21■□□□□ 0.67
SALL3Q9BXA9 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC19.21■□□□□ 0.67
SALL3Q9BXA9 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC19.21■□□□□ 0.67
SALL3Q9BXA9 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC19.21■□□□□ 0.67
SALL3Q9BXA9 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC19.21■□□□□ 0.67
SALL3Q9BXA9 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC19.21■□□□□ 0.67
SALL3Q9BXA9 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC19.21■□□□□ 0.67
SALL3Q9BXA9 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC19.21■□□□□ 0.67
SALL3Q9BXA9 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
SALL3Q9BXA9 VMA21-202ENST00000370361 693 ntTSL 5 BASIC19.21■□□□□ 0.67
SALL3Q9BXA9 PNMT-202ENST00000394246 821 ntTSL 2 BASIC19.21■□□□□ 0.67
SALL3Q9BXA9 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC19.21■□□□□ 0.67
SALL3Q9BXA9 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC19.21■□□□□ 0.67
SALL3Q9BXA9 AL589987.1-201ENST00000453380 819 ntBASIC19.21■□□□□ 0.67
SALL3Q9BXA9 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC19.21■□□□□ 0.67
SALL3Q9BXA9 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SALL3Q9BXA9 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SALL3Q9BXA9 AC106028.4-201ENST00000614509 607 ntBASIC19.21■□□□□ 0.67
SALL3Q9BXA9 5S_rRNA.22-201ENST00000614916 106 ntBASIC19.21■□□□□ 0.67
SALL3Q9BXA9 AL390754.1-201ENST00000619088 582 ntBASIC19.21■□□□□ 0.67
SALL3Q9BXA9 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC19.21■□□□□ 0.67
SALL3Q9BXA9 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SALL3Q9BXA9 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SALL3Q9BXA9 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SALL3Q9BXA9 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SALL3Q9BXA9 CELP-203ENST00000624767 2414 ntTSL 5 BASIC19.21■□□□□ 0.66
SALL3Q9BXA9 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC19.2■□□□□ 0.66
SALL3Q9BXA9 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SALL3Q9BXA9 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SALL3Q9BXA9 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SALL3Q9BXA9 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SALL3Q9BXA9 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SALL3Q9BXA9 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC19.2■□□□□ 0.66
SALL3Q9BXA9 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC19.2■□□□□ 0.66
SALL3Q9BXA9 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SALL3Q9BXA9 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SALL3Q9BXA9 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC19.2■□□□□ 0.66
SALL3Q9BXA9 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC19.2■□□□□ 0.66
SALL3Q9BXA9 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SALL3Q9BXA9 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SALL3Q9BXA9 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
SALL3Q9BXA9 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC19.2■□□□□ 0.66
SALL3Q9BXA9 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SALL3Q9BXA9 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SALL3Q9BXA9 AMT-224ENST00000635808 1610 ntTSL 5 BASIC19.2■□□□□ 0.66
SALL3Q9BXA9 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SALL3Q9BXA9 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SALL3Q9BXA9 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SALL3Q9BXA9 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SALL3Q9BXA9 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SALL3Q9BXA9 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SALL3Q9BXA9 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
SALL3Q9BXA9 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC19.2■□□□□ 0.66
SALL3Q9BXA9 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC19.2■□□□□ 0.66
SALL3Q9BXA9 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC19.2■□□□□ 0.66
SALL3Q9BXA9 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC19.2■□□□□ 0.66
SALL3Q9BXA9 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC19.2■□□□□ 0.66
SALL3Q9BXA9 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC19.2■□□□□ 0.66
SALL3Q9BXA9 UBL5-208ENST00000593087 320 ntTSL 3 BASIC19.2■□□□□ 0.66
SALL3Q9BXA9 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SALL3Q9BXA9 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SALL3Q9BXA9 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SALL3Q9BXA9 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SALL3Q9BXA9 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SALL3Q9BXA9 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SALL3Q9BXA9 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
SALL3Q9BXA9 AC091951.1-201ENST00000512854 2465 ntBASIC19.19■□□□□ 0.66
SALL3Q9BXA9 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SALL3Q9BXA9 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SALL3Q9BXA9 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC19.19■□□□□ 0.66
SALL3Q9BXA9 STRN-202ENST00000379213 2254 ntTSL 5 BASIC19.19■□□□□ 0.66
SALL3Q9BXA9 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SALL3Q9BXA9 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SALL3Q9BXA9 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SALL3Q9BXA9 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC19.19■□□□□ 0.66
SALL3Q9BXA9 NME2-201ENST00000393183 568 ntTSL 2 BASIC19.19■□□□□ 0.66
SALL3Q9BXA9 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SALL3Q9BXA9 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC19.19■□□□□ 0.66
SALL3Q9BXA9 TMPRSS11CP-201ENST00000453277 683 ntBASIC19.19■□□□□ 0.66
SALL3Q9BXA9 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC19.19■□□□□ 0.66
SALL3Q9BXA9 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SALL3Q9BXA9 CYMP-203ENST00000474680 1263 ntBASIC19.19■□□□□ 0.66
SALL3Q9BXA9 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC19.19■□□□□ 0.66
SALL3Q9BXA9 PRR29-204ENST00000577953 565 ntTSL 4 BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms