Protein–RNA interactions for Protein: P58304

VSX2, Visual system homeobox 2, humanhuman

Predicted RBP Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX2P58304 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
VSX2P58304 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC15.3■□□□□ 0.04
VSX2P58304 FXR1-221ENST00000491674 365 ntTSL 2 BASIC15.3■□□□□ 0.04
VSX2P58304 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VSX2P58304 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VSX2P58304 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC15.3■□□□□ 0.04
VSX2P58304 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VSX2P58304 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VSX2P58304 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VSX2P58304 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
VSX2P58304 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC15.3■□□□□ 0.04
VSX2P58304 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC15.3■□□□□ 0.04
VSX2P58304 MIR4745-201ENST00000577608 62 ntBASIC15.3■□□□□ 0.04
VSX2P58304 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VSX2P58304 FRMD6-AS1-201ENST00000617151 2229 ntBASIC15.3■□□□□ 0.04
VSX2P58304 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC15.3■□□□□ 0.04
VSX2P58304 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC15.3■□□□□ 0.04
VSX2P58304 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC15.3■□□□□ 0.04
VSX2P58304 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VSX2P58304 MIR6069-201ENST00000620069 79 ntBASIC15.3■□□□□ 0.04
VSX2P58304 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC15.3■□□□□ 0.04
VSX2P58304 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC15.3■□□□□ 0.04
VSX2P58304 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
VSX2P58304 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VSX2P58304 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
VSX2P58304 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
VSX2P58304 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VSX2P58304 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VSX2P58304 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC15.3■□□□□ 0.04
VSX2P58304 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
VSX2P58304 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VSX2P58304 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VSX2P58304 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VSX2P58304 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VSX2P58304 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC15.29■□□□□ 0.04
VSX2P58304 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
VSX2P58304 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
VSX2P58304 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VSX2P58304 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VSX2P58304 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VSX2P58304 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
VSX2P58304 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VSX2P58304 ZBTB45P2-201ENST00000452245 1531 ntBASIC15.29■□□□□ 0.04
VSX2P58304 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VSX2P58304 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
VSX2P58304 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
VSX2P58304 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VSX2P58304 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VSX2P58304 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VSX2P58304 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
VSX2P58304 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
VSX2P58304 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
VSX2P58304 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC15.29■□□□□ 0.04
VSX2P58304 RAC2-204ENST00000406508 893 ntTSL 5 BASIC15.29■□□□□ 0.04
VSX2P58304 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VSX2P58304 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VSX2P58304 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VSX2P58304 STOM-203ENST00000538954 1257 ntTSL 5 BASIC15.29■□□□□ 0.04
VSX2P58304 AC010336.2-201ENST00000564226 506 ntBASIC15.29■□□□□ 0.04
VSX2P58304 SPIB-207ENST00000597855 564 ntTSL 4 BASIC15.29■□□□□ 0.04
VSX2P58304 CYP2T1P-202ENST00000641596 2535 ntBASIC15.29■□□□□ 0.04
VSX2P58304 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VSX2P58304 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
VSX2P58304 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
VSX2P58304 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VSX2P58304 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VSX2P58304 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
VSX2P58304 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
VSX2P58304 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC15.29■□□□□ 0.04
VSX2P58304 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.29■□□□□ 0.04
VSX2P58304 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VSX2P58304 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC15.29■□□□□ 0.04
VSX2P58304 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VSX2P58304 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC15.29■□□□□ 0.04
VSX2P58304 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VSX2P58304 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VSX2P58304 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC15.29■□□□□ 0.04
VSX2P58304 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
VSX2P58304 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC15.29■□□□□ 0.04
VSX2P58304 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
VSX2P58304 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.28■□□□□ 0.04
VSX2P58304 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.28■□□□□ 0.04
VSX2P58304 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.28■□□□□ 0.04
VSX2P58304 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.28■□□□□ 0.04
VSX2P58304 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC15.28■□□□□ 0.04
VSX2P58304 KRT8P37-201ENST00000451609 1420 ntBASIC15.28■□□□□ 0.04
VSX2P58304 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VSX2P58304 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.28■□□□□ 0.04
VSX2P58304 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
VSX2P58304 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC15.28■□□□□ 0.04
VSX2P58304 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VSX2P58304 MRPS18AP1-201ENST00000414458 589 ntBASIC15.28■□□□□ 0.04
VSX2P58304 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC15.28■□□□□ 0.04
VSX2P58304 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC15.28■□□□□ 0.04
VSX2P58304 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC15.28■□□□□ 0.04
VSX2P58304 AC009477.1-201ENST00000452936 217 ntBASIC15.28■□□□□ 0.04
VSX2P58304 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC15.28■□□□□ 0.04
VSX2P58304 SSH2-210ENST00000582084 560 ntTSL 3 BASIC15.28■□□□□ 0.04
VSX2P58304 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.28■□□□□ 0.04
VSX2P58304 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms