Protein–RNA interactions for Protein: P35453

HOXD13, Homeobox protein Hox-D13, humanhuman

Predictions only

Length 343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD13P35453 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC17.33■□□□□ 0.37
HOXD13P35453 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC17.33■□□□□ 0.37
HOXD13P35453 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC17.33■□□□□ 0.37
HOXD13P35453 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
HOXD13P35453 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HOXD13P35453 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
HOXD13P35453 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
HOXD13P35453 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
HOXD13P35453 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC17.33■□□□□ 0.36
HOXD13P35453 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC17.33■□□□□ 0.36
HOXD13P35453 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
HOXD13P35453 RN7SL618P-201ENST00000477850 296 ntBASIC17.33■□□□□ 0.36
HOXD13P35453 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC17.33■□□□□ 0.36
HOXD13P35453 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC17.33■□□□□ 0.36
HOXD13P35453 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HOXD13P35453 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC17.33■□□□□ 0.36
HOXD13P35453 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC17.33■□□□□ 0.36
HOXD13P35453 TEX48-202ENST00000612244 662 ntTSL 3 BASIC17.33■□□□□ 0.36
HOXD13P35453 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
HOXD13P35453 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HOXD13P35453 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HOXD13P35453 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.36
HOXD13P35453 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HOXD13P35453 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
HOXD13P35453 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
HOXD13P35453 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
HOXD13P35453 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HOXD13P35453 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
HOXD13P35453 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HOXD13P35453 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HOXD13P35453 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC17.32■□□□□ 0.36
HOXD13P35453 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC17.32■□□□□ 0.36
HOXD13P35453 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
HOXD13P35453 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC17.32■□□□□ 0.36
HOXD13P35453 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC17.32■□□□□ 0.36
HOXD13P35453 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HOXD13P35453 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HOXD13P35453 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC17.32■□□□□ 0.36
HOXD13P35453 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
HOXD13P35453 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HOXD13P35453 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
HOXD13P35453 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC17.32■□□□□ 0.36
HOXD13P35453 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HOXD13P35453 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HOXD13P35453 PNMT-202ENST00000394246 821 ntTSL 2 BASIC17.32■□□□□ 0.36
HOXD13P35453 HNRNPA3P1-201ENST00000401429 1139 ntBASIC17.32■□□□□ 0.36
HOXD13P35453 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC17.32■□□□□ 0.36
HOXD13P35453 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC17.32■□□□□ 0.36
HOXD13P35453 MRPS18AP1-201ENST00000414458 589 ntBASIC17.32■□□□□ 0.36
HOXD13P35453 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC17.32■□□□□ 0.36
HOXD13P35453 AC241585.1-201ENST00000433527 519 ntBASIC17.32■□□□□ 0.36
HOXD13P35453 HNRNPA3P5-201ENST00000455201 833 ntBASIC17.32■□□□□ 0.36
HOXD13P35453 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC17.32■□□□□ 0.36
HOXD13P35453 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC17.32■□□□□ 0.36
HOXD13P35453 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC17.32■□□□□ 0.36
HOXD13P35453 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC17.32■□□□□ 0.36
HOXD13P35453 AL390754.1-201ENST00000619088 582 ntBASIC17.32■□□□□ 0.36
HOXD13P35453 RAB34-223ENST00000636154 730 ntTSL 2 BASIC17.32■□□□□ 0.36
HOXD13P35453 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HOXD13P35453 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HOXD13P35453 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
HOXD13P35453 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC17.32■□□□□ 0.36
HOXD13P35453 TMBIM7P-203ENST00000641617 1718 ntBASIC17.32■□□□□ 0.36
HOXD13P35453 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC17.32■□□□□ 0.36
HOXD13P35453 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HOXD13P35453 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
HOXD13P35453 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HOXD13P35453 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
HOXD13P35453 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HOXD13P35453 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC17.31■□□□□ 0.36
HOXD13P35453 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC17.31■□□□□ 0.36
HOXD13P35453 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HOXD13P35453 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HOXD13P35453 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HOXD13P35453 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HOXD13P35453 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC17.31■□□□□ 0.36
HOXD13P35453 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HOXD13P35453 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC17.31■□□□□ 0.36
HOXD13P35453 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC17.31■□□□□ 0.36
HOXD13P35453 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HOXD13P35453 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC17.31■□□□□ 0.36
HOXD13P35453 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HOXD13P35453 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC17.31■□□□□ 0.36
HOXD13P35453 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HOXD13P35453 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC17.31■□□□□ 0.36
HOXD13P35453 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC17.31■□□□□ 0.36
HOXD13P35453 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC17.31■□□□□ 0.36
HOXD13P35453 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC17.31■□□□□ 0.36
HOXD13P35453 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HOXD13P35453 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC17.31■□□□□ 0.36
HOXD13P35453 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC17.31■□□□□ 0.36
HOXD13P35453 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC17.31■□□□□ 0.36
HOXD13P35453 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
HOXD13P35453 AC027796.2-201ENST00000575326 344 ntBASIC17.31■□□□□ 0.36
HOXD13P35453 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
HOXD13P35453 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC17.31■□□□□ 0.36
HOXD13P35453 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HOXD13P35453 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.31■□□□□ 0.36
HOXD13P35453 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HOXD13P35453 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms