Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC19.59■□□□□ 0.73
COL5A3P25940 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC19.59■□□□□ 0.73
COL5A3P25940 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC19.59■□□□□ 0.73
COL5A3P25940 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC19.59■□□□□ 0.73
COL5A3P25940 AC091544.8-201ENST00000619490 361 ntBASIC19.59■□□□□ 0.73
COL5A3P25940 AC022748.3-201ENST00000621828 275 ntBASIC19.59■□□□□ 0.73
COL5A3P25940 AC128714.1-201ENST00000637035 887 ntBASIC19.59■□□□□ 0.73
COL5A3P25940 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL5A3P25940 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL5A3P25940 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL5A3P25940 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
COL5A3P25940 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
COL5A3P25940 AL645937.2-201ENST00000396808 931 ntBASIC19.59■□□□□ 0.73
COL5A3P25940 AL136309.1-201ENST00000403917 691 ntBASIC19.59■□□□□ 0.73
COL5A3P25940 AC004066.1-201ENST00000502488 802 ntBASIC19.59■□□□□ 0.73
COL5A3P25940 FTLP10-202ENST00000505798 471 ntBASIC19.59■□□□□ 0.73
COL5A3P25940 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL5A3P25940 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC19.59■□□□□ 0.73
COL5A3P25940 SPCS2P2-201ENST00000603270 608 ntBASIC19.59■□□□□ 0.73
COL5A3P25940 AC026740.1-201ENST00000607068 791 ntBASIC19.59■□□□□ 0.73
COL5A3P25940 AC007663.3-201ENST00000609632 465 ntBASIC19.59■□□□□ 0.73
COL5A3P25940 AF254983.2-201ENST00000612331 135 ntBASIC19.59■□□□□ 0.73
COL5A3P25940 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL5A3P25940 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC19.59■□□□□ 0.73
COL5A3P25940 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL5A3P25940 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC19.59■□□□□ 0.73
COL5A3P25940 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
COL5A3P25940 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC19.58■□□□□ 0.73
COL5A3P25940 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
COL5A3P25940 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
COL5A3P25940 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.72
COL5A3P25940 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
COL5A3P25940 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
COL5A3P25940 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC19.58■□□□□ 0.72
COL5A3P25940 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC19.58■□□□□ 0.72
COL5A3P25940 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
COL5A3P25940 MIR4722-201ENST00000578292 60 ntBASIC19.58■□□□□ 0.72
COL5A3P25940 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC19.58■□□□□ 0.72
COL5A3P25940 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC19.58■□□□□ 0.72
COL5A3P25940 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.72
COL5A3P25940 AC244157.2-201ENST00000616239 1006 ntBASIC19.58■□□□□ 0.72
COL5A3P25940 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL5A3P25940 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC19.58■□□□□ 0.72
COL5A3P25940 AC080080.1-201ENST00000625121 2420 ntBASIC19.58■□□□□ 0.72
COL5A3P25940 PKD1P6-201ENST00000343738 4769 ntBASIC19.58■□□□□ 0.72
COL5A3P25940 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC19.58■□□□□ 0.72
COL5A3P25940 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
COL5A3P25940 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL5A3P25940 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC19.57■□□□□ 0.72
COL5A3P25940 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC19.57■□□□□ 0.72
COL5A3P25940 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL5A3P25940 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC19.57■□□□□ 0.72
COL5A3P25940 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC19.57■□□□□ 0.72
COL5A3P25940 NUP210P1-202ENST00000504322 710 ntBASIC19.57■□□□□ 0.72
COL5A3P25940 AC100850.1-201ENST00000506768 649 ntBASIC19.57■□□□□ 0.72
COL5A3P25940 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC19.57■□□□□ 0.72
COL5A3P25940 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
COL5A3P25940 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC19.57■□□□□ 0.72
COL5A3P25940 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC19.57■□□□□ 0.72
COL5A3P25940 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL5A3P25940 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC19.57■□□□□ 0.72
COL5A3P25940 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL5A3P25940 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
COL5A3P25940 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL5A3P25940 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL5A3P25940 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL5A3P25940 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
COL5A3P25940 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL5A3P25940 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC19.56■□□□□ 0.72
COL5A3P25940 MIR769-201ENST00000390225 118 ntBASIC19.56■□□□□ 0.72
COL5A3P25940 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
COL5A3P25940 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL5A3P25940 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL5A3P25940 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL5A3P25940 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL5A3P25940 RN7SL769P-201ENST00000469386 295 ntBASIC19.56■□□□□ 0.72
COL5A3P25940 RN7SL11P-201ENST00000471305 293 ntBASIC19.56■□□□□ 0.72
COL5A3P25940 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL5A3P25940 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
COL5A3P25940 SAMD11P1-201ENST00000571429 661 ntBASIC19.56■□□□□ 0.72
COL5A3P25940 DIO1-215ENST00000610607 796 ntTSL 5 BASIC19.56■□□□□ 0.72
COL5A3P25940 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
COL5A3P25940 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC19.56■□□□□ 0.72
COL5A3P25940 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
COL5A3P25940 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL5A3P25940 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL5A3P25940 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL5A3P25940 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL5A3P25940 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL5A3P25940 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL5A3P25940 AC084364.1-201ENST00000551967 1556 ntBASIC19.56■□□□□ 0.72
COL5A3P25940 AC007787.1-201ENST00000588095 1583 ntBASIC19.56■□□□□ 0.72
COL5A3P25940 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL5A3P25940 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL5A3P25940 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL5A3P25940 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
COL5A3P25940 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL5A3P25940 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
COL5A3P25940 HLA-DQB2-229ENST00000411527 1059 ntBASIC19.56■□□□□ 0.72
COL5A3P25940 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms