Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RNF40O75150 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RNF40O75150 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
RNF40O75150 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RNF40O75150 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RNF40O75150 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
RNF40O75150 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
RNF40O75150 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
RNF40O75150 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF40O75150 LCK-206ENST00000373564 2137 ntTSL 5 BASIC17.3■□□□□ 0.36
RNF40O75150 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF40O75150 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RNF40O75150 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF40O75150 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF40O75150 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
RNF40O75150 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC17.3■□□□□ 0.36
RNF40O75150 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC17.3■□□□□ 0.36
RNF40O75150 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF40O75150 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC17.3■□□□□ 0.36
RNF40O75150 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC17.3■□□□□ 0.36
RNF40O75150 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF40O75150 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF40O75150 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC17.3■□□□□ 0.36
RNF40O75150 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
RNF40O75150 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF40O75150 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF40O75150 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC17.3■□□□□ 0.36
RNF40O75150 CNN2P2-201ENST00000443536 909 ntBASIC17.3■□□□□ 0.36
RNF40O75150 CNN2P3-201ENST00000450201 906 ntBASIC17.3■□□□□ 0.36
RNF40O75150 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC17.3■□□□□ 0.36
RNF40O75150 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC17.3■□□□□ 0.36
RNF40O75150 AL135744.1-201ENST00000565098 629 ntBASIC17.3■□□□□ 0.36
RNF40O75150 AC138761.1-201ENST00000584393 385 ntBASIC17.3■□□□□ 0.36
RNF40O75150 AL136317.3-201ENST00000618497 906 ntBASIC17.3■□□□□ 0.36
RNF40O75150 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RNF40O75150 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF40O75150 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
RNF40O75150 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
RNF40O75150 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF40O75150 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC17.3■□□□□ 0.36
RNF40O75150 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
RNF40O75150 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF40O75150 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF40O75150 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF40O75150 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC17.3■□□□□ 0.36
RNF40O75150 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RNF40O75150 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF40O75150 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF40O75150 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
RNF40O75150 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF40O75150 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF40O75150 GGT4P-201ENST00000623672 1708 ntBASIC17.3■□□□□ 0.36
RNF40O75150 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF40O75150 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF40O75150 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF40O75150 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC17.29■□□□□ 0.36
RNF40O75150 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF40O75150 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF40O75150 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RNF40O75150 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC17.29■□□□□ 0.36
RNF40O75150 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC17.29■□□□□ 0.36
RNF40O75150 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RNF40O75150 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RNF40O75150 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF40O75150 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF40O75150 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF40O75150 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC17.29■□□□□ 0.36
RNF40O75150 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RNF40O75150 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RNF40O75150 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RNF40O75150 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC17.29■□□□□ 0.36
RNF40O75150 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF40O75150 TSFM-210ENST00000550559 897 ntTSL 5 BASIC17.29■□□□□ 0.36
RNF40O75150 THTPA-204ENST00000554970 569 ntTSL 4 BASIC17.29■□□□□ 0.36
RNF40O75150 THTPA-206ENST00000556015 535 ntTSL 3 BASIC17.29■□□□□ 0.36
RNF40O75150 AC243562.1-201ENST00000560672 389 ntBASIC17.29■□□□□ 0.36
RNF40O75150 RARRES2P8-201ENST00000566335 367 ntBASIC17.29■□□□□ 0.36
RNF40O75150 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC17.29■□□□□ 0.36
RNF40O75150 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.29■□□□□ 0.36
RNF40O75150 MIR4515-201ENST00000584082 81 ntBASIC17.29■□□□□ 0.36
RNF40O75150 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC17.29■□□□□ 0.36
RNF40O75150 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC17.29■□□□□ 0.36
RNF40O75150 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF40O75150 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
RNF40O75150 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF40O75150 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF40O75150 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF40O75150 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC17.29■□□□□ 0.36
RNF40O75150 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF40O75150 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
RNF40O75150 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RNF40O75150 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RNF40O75150 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF40O75150 AC023908.3-201ENST00000564211 3047 ntBASIC17.29■□□□□ 0.36
RNF40O75150 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC17.29■□□□□ 0.36
RNF40O75150 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC17.29■□□□□ 0.36
RNF40O75150 AC006449.6-201ENST00000612330 2296 ntBASIC17.28■□□□□ 0.36
RNF40O75150 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
RNF40O75150 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC17.28■□□□□ 0.36
RNF40O75150 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms