Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
HMGB3O15347 FGFR1-211ENST00000425967 5375 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
HMGB3O15347 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
HMGB3O15347 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HMGB3O15347 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC12.91□□□□□ -0.34
HMGB3O15347 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC12.91□□□□□ -0.34
HMGB3O15347 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HMGB3O15347 KPNA4-201ENST00000334256 8981 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HMGB3O15347 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HMGB3O15347 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
HMGB3O15347 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
HMGB3O15347 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
HMGB3O15347 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC12.91□□□□□ -0.34
HMGB3O15347 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC12.91□□□□□ -0.34
HMGB3O15347 NABP1-203ENST00000409510 843 ntTSL 5 BASIC12.91□□□□□ -0.34
HMGB3O15347 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC12.91□□□□□ -0.34
HMGB3O15347 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC12.91□□□□□ -0.34
HMGB3O15347 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
HMGB3O15347 AC091607.1-201ENST00000490318 1060 ntBASIC12.91□□□□□ -0.34
HMGB3O15347 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
HMGB3O15347 AC011467.2-201ENST00000598425 242 ntBASIC12.91□□□□□ -0.34
HMGB3O15347 HYMAI.1-201ENST00000620949 238 ntBASIC12.91□□□□□ -0.34
HMGB3O15347 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
HMGB3O15347 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC12.91□□□□□ -0.34
HMGB3O15347 AL359258.3-201ENST00000622910 2331 ntBASIC12.91□□□□□ -0.34
HMGB3O15347 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC12.91□□□□□ -0.34
HMGB3O15347 DLGAP1-201ENST00000315677 6683 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
HMGB3O15347 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC12.91□□□□□ -0.34
HMGB3O15347 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
HMGB3O15347 USP20-201ENST00000315480 4458 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HMGB3O15347 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC12.91□□□□□ -0.34
HMGB3O15347 AC020658.6-201ENST00000623564 1870 ntBASIC12.91□□□□□ -0.34
HMGB3O15347 RALGAPB-201ENST00000262879 8663 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
HMGB3O15347 RALGAPB-203ENST00000397042 8652 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HMGB3O15347 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HMGB3O15347 EIF4G1-207ENST00000411531 4683 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
HMGB3O15347 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC12.91□□□□□ -0.34
HMGB3O15347 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HMGB3O15347 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
HMGB3O15347 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
HMGB3O15347 DNAH10OS-201ENST00000514254 5040 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
HMGB3O15347 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
HMGB3O15347 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC12.9□□□□□ -0.34
HMGB3O15347 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
HMGB3O15347 AC117489.1-201ENST00000625169 3217 ntBASIC12.9□□□□□ -0.34
HMGB3O15347 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HMGB3O15347 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
HMGB3O15347 PMPCAP1-201ENST00000508114 1576 ntBASIC12.9□□□□□ -0.34
HMGB3O15347 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HMGB3O15347 RAB3IP-212ENST00000550536 9646 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
HMGB3O15347 CD34-201ENST00000310833 8246 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
HMGB3O15347 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC12.9□□□□□ -0.34
HMGB3O15347 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC12.9□□□□□ -0.34
HMGB3O15347 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC12.9□□□□□ -0.34
HMGB3O15347 NQO2-205ENST00000380455 10084 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HMGB3O15347 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HMGB3O15347 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC12.9□□□□□ -0.34
HMGB3O15347 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
HMGB3O15347 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC12.9□□□□□ -0.34
HMGB3O15347 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC12.9□□□□□ -0.34
HMGB3O15347 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HMGB3O15347 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HMGB3O15347 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
HMGB3O15347 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC12.9□□□□□ -0.34
HMGB3O15347 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
HMGB3O15347 AC117947.1-201ENST00000427448 529 ntBASIC12.9□□□□□ -0.34
HMGB3O15347 SPDYE13P-201ENST00000445314 798 ntBASIC12.9□□□□□ -0.34
HMGB3O15347 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
HMGB3O15347 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
HMGB3O15347 ABBA01031661.1-201ENST00000634362 1253 ntBASIC12.9□□□□□ -0.34
HMGB3O15347 SLX4-201ENST00000294008 7307 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
HMGB3O15347 ATP11A-202ENST00000375645 8795 ntAPPRIS P2 TSL 5 BASIC12.9□□□□□ -0.34
HMGB3O15347 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC12.9□□□□□ -0.34
HMGB3O15347 PTCH1-209ENST00000437951 8049 ntTSL 5 BASIC12.9□□□□□ -0.34
HMGB3O15347 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC12.9□□□□□ -0.34
HMGB3O15347 TGFBRAP1-203ENST00000595531 5595 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HMGB3O15347 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
HMGB3O15347 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
HMGB3O15347 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC12.9□□□□□ -0.34
HMGB3O15347 PTPRN2-203ENST00000389418 4706 ntAPPRIS P4 TSL 1 (best) BASIC12.9□□□□□ -0.34
HMGB3O15347 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC12.9□□□□□ -0.34
HMGB3O15347 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HMGB3O15347 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HMGB3O15347 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HMGB3O15347 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
HMGB3O15347 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HMGB3O15347 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
HMGB3O15347 TNN-203ENST00000622870 3719 ntTSL 5 BASIC12.9□□□□□ -0.34
HMGB3O15347 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
HMGB3O15347 LGALS8-AS1-201ENST00000487567 1457 ntBASIC12.9□□□□□ -0.34
HMGB3O15347 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
HMGB3O15347 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC12.9□□□□□ -0.34
HMGB3O15347 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
HMGB3O15347 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC12.9□□□□□ -0.35
HMGB3O15347 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
HMGB3O15347 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
HMGB3O15347 EIF4G1-205ENST00000382330 5129 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
HMGB3O15347 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
HMGB3O15347 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC12.89□□□□□ -0.35
HMGB3O15347 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC12.89□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms