RNA–Protein interactions for RNA: ENST00000437951.5

PTCH1-209, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 8,049 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-209ENST00000437951 PELP1Q8IZL8 1130 aaKnown RBP19.27■□□□□ 0.68
PTCH1-209ENST00000437951 MYT1Q01538 1121 aa18.84■□□□□ 0.61
PTCH1-209ENST00000437951 DCAF8L2P0C7V8 631 aa18.59■□□□□ 0.57
PTCH1-209ENST00000437951 CCER1Q8TC90 406 aaPredicted RBP18.31■□□□□ 0.52
PTCH1-209ENST00000437951 ERICH6Q7L0X2 663 aa18.22■□□□□ 0.51
PTCH1-209ENST00000437951 CENPBP07199 599 aaPredicted RBP18.03■□□□□ 0.48
PTCH1-209ENST00000437951 ZEB1P37275 1124 aaPredicted RBP17.78■□□□□ 0.44
PTCH1-209ENST00000437951 YTHDC1Q96MU7 727 aaKnown RBP17.75■□□□□ 0.43
PTCH1-209ENST00000437951 SUPT5HO00267 1087 aaKnown RBP17.65■□□□□ 0.42
PTCH1-209ENST00000437951 APLP2Q06481 763 aa17.65■□□□□ 0.42
PTCH1-209ENST00000437951 FAM9AQ8IZU1 332 aaPredicted RBP17.57■□□□□ 0.4
PTCH1-209ENST00000437951 NEFLP07196 543 aa17.55■□□□□ 0.4
PTCH1-209ENST00000437951 TTBK1Q5TCY1 1321 aaPredicted RBP17.55■□□□□ 0.4
PTCH1-209ENST00000437951 NISCHQ9Y2I1 1504 aa17.44■□□□□ 0.38
PTCH1-209ENST00000437951 PCGF6Q9BYE7 350 aa17.25■□□□□ 0.35
PTCH1-209ENST00000437951 DAXXQ9UER7 740 aaPredicted RBP17.25■□□□□ 0.35
PTCH1-209ENST00000437951 EHMT2Q96KQ7 1210 aa17.02■□□□□ 0.32
PTCH1-209ENST00000437951 RTL5Q5HYW3 569 aaPredicted RBP16.99■□□□□ 0.31
PTCH1-209ENST00000437951 SHROOM4Q9ULL8 1493 aa16.93■□□□□ 0.3
PTCH1-209ENST00000437951 ZNF316A6NFI3 1004 aaPredicted RBP16.79■□□□□ 0.28
PTCH1-209ENST00000437951 TRIM26Q12899 539 aaPredicted RBP16.64■□□□□ 0.25
PTCH1-209ENST00000437951 HRCP23327 699 aa16.63■□□□□ 0.25
PTCH1-209ENST00000437951 GLIPR1L2Q4G1C9 344 aa16.61■□□□□ 0.25
PTCH1-209ENST00000437951 ATP1B4Q9UN42 357 aaPredicted RBP16.57■□□□□ 0.24
PTCH1-209ENST00000437951 TRIM41Q8WV44 630 aa16.54■□□□□ 0.24
PTCH1-209ENST00000437951 MYT1LQ9UL68 1186 aa16.46■□□□□ 0.23
PTCH1-209ENST00000437951 CLSPNQ9HAW4 1339 aa16.42■□□□□ 0.22
PTCH1-209ENST00000437951 UBTFP17480 764 aaKnown RBP16.41■□□□□ 0.22
PTCH1-209ENST00000437951 CDK11AQ9UQ88 783 aaPredicted RBP16.36■□□□□ 0.21
PTCH1-209ENST00000437951 RANGAP1P46060 587 aaPredicted RBP16.36■□□□□ 0.21
PTCH1-209ENST00000437951 DIEXFQ68CQ4 756 aaKnown RBP16.29■□□□□ 0.2
PTCH1-209ENST00000437951 ANP32BQ92688 251 aaKnown RBP16.22■□□□□ 0.19
PTCH1-209ENST00000437951 ANP32AP39687 249 aaKnown RBP16.19■□□□□ 0.18
PTCH1-209ENST00000437951 EIF5BO60841 1220 aaKnown RBP16.14■□□□□ 0.17
PTCH1-209ENST00000437951 ZBTB47Q9UFB7 747 aaPredicted RBP16.12■□□□□ 0.17
PTCH1-209ENST00000437951 GTF3C3Q9Y5Q9 886 aa16.12■□□□□ 0.17
PTCH1-209ENST00000437951 POLR3GLQ9BT43 218 aa16.11■□□□□ 0.17
PTCH1-209ENST00000437951 SLC4A1APQ9BWU0 796 aaKnown RBP15.99■□□□□ 0.15
PTCH1-209ENST00000437951 ANP32CO43423 234 aa15.98■□□□□ 0.15
PTCH1-209ENST00000437951 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.98■□□□□ 0.15
PTCH1-209ENST00000437951 HNRNPUL2Q1KMD3 747 aaKnown RBP15.98■□□□□ 0.15
PTCH1-209ENST00000437951 CHIC1Q5VXU3 224 aa15.96■□□□□ 0.15
PTCH1-209ENST00000437951 ACIN1Q9UKV3 1341 aaKnown RBP15.92■□□□□ 0.14
PTCH1-209ENST00000437951 TNNT2P45379 298 aaPredicted RBP15.9■□□□□ 0.14
PTCH1-209ENST00000437951 PPARGC1BQ86YN6 1023 aaKnown RBP15.87■□□□□ 0.13
PTCH1-209ENST00000437951 BCANQ96GW7 911 aa15.87■□□□□ 0.13
PTCH1-209ENST00000437951 ITGAEP38570 1179 aa15.85■□□□□ 0.13
PTCH1-209ENST00000437951 UPF2Q9HAU5 1272 aaKnown RBP15.84■□□□□ 0.13
PTCH1-209ENST00000437951 CANXP27824 592 aaKnown RBP15.83■□□□□ 0.13
PTCH1-209ENST00000437951 NEFMP07197 916 aa15.81■□□□□ 0.12
PTCH1-209ENST00000437951 HSP90AA1P07900 732 aaKnown RBP15.76■□□□□ 0.11
PTCH1-209ENST00000437951 ANP32EQ9BTT0 268 aa15.76■□□□□ 0.11
PTCH1-209ENST00000437951 CNGB1Q14028 1251 aaPredicted RBP15.73■□□□□ 0.11
PTCH1-209ENST00000437951 TRIM44Q96DX7 344 aaPredicted RBP15.69■□□□□ 0.1
PTCH1-209ENST00000437951 NPM2Q86SE8 214 aaKnown RBP15.66■□□□□ 0.1
PTCH1-209ENST00000437951 SLC24A1O60721 1099 aa15.61■□□□□ 0.09
PTCH1-209ENST00000437951 NCLP19338 710 aaKnown RBP15.59■□□□□ 0.09
PTCH1-209ENST00000437951 DDRGK1Q96HY6 314 aa15.58■□□□□ 0.08
PTCH1-209ENST00000437951 ERICH6BQ5W0A0 696 aa15.55■□□□□ 0.08
PTCH1-209ENST00000437951 CDK11BP21127 795 aaKnown RBP15.55■□□□□ 0.08
PTCH1-209ENST00000437951 TRIM52Q96A61 297 aa15.53■□□□□ 0.08
PTCH1-209ENST00000437951 FKBP8Q14318 412 aa15.53■□□□□ 0.08
PTCH1-209ENST00000437951 FAM50AQ14320 339 aaKnown RBP15.53■□□□□ 0.08
PTCH1-209ENST00000437951 LOC105371045A0A1W2PR82 267 aa15.52■□□□□ 0.08
PTCH1-209ENST00000437951 NBR1Q14596 966 aa15.52■□□□□ 0.07
PTCH1-209ENST00000437951 NEUROD1Q13562 356 aa15.51■□□□□ 0.07
PTCH1-209ENST00000437951 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.5■□□□□ 0.07
PTCH1-209ENST00000437951 BECN1Q14457 450 aa15.5■□□□□ 0.07
PTCH1-209ENST00000437951 GOLGA6L22H0YM25 854 aa15.45■□□□□ 0.06
PTCH1-209ENST00000437951 CCDC136Q96JN2 1154 aa15.42■□□□□ 0.06
PTCH1-209ENST00000437951 PPM1GO15355 546 aaPredicted RBP15.37■□□□□ 0.05
PTCH1-209ENST00000437951 NAP1L5Q96NT1 182 aaPredicted RBP15.31■□□□□ 0.04
PTCH1-209ENST00000437951 ZNF326Q5BKZ1 582 aaKnown RBP15.31■□□□□ 0.04
PTCH1-209ENST00000437951 HNRNPUQ00839 825 aaKnown RBP eCLIP15.3■□□□□ 0.04
PTCH1-209ENST00000437951 BCL11AQ9H165 835 aa15.3■□□□□ 0.04
PTCH1-209ENST00000437951 DNTTIP2Q5QJE6 756 aaKnown RBP15.29■□□□□ 0.04
PTCH1-209ENST00000437951 PTMAP06454 111 aaKnown RBP15.29■□□□□ 0.04
PTCH1-209ENST00000437951 GOLGA6L6A8MZA4 724 aa15.27■□□□□ 0.04
PTCH1-209ENST00000437951 ESF1Q9H501 851 aaKnown RBP15.27■□□□□ 0.04
PTCH1-209ENST00000437951 MYH16Q9H6N6 1097 aa15.27■□□□□ 0.03
PTCH1-209ENST00000437951 ARXQ96QS3 562 aa15.26■□□□□ 0.03
PTCH1-209ENST00000437951 ZRSR1Q15695 479 aaKnown RBP15.24■□□□□ 0.03
PTCH1-209ENST00000437951 CHAF1AQ13111 956 aaPredicted RBP15.23■□□□□ 0.03
PTCH1-209ENST00000437951 DCAF1Q9Y4B6 1507 aa15.22■□□□□ 0.03
PTCH1-209ENST00000437951 TONSLQ96HA7 1378 aa15.22■□□□□ 0.03
PTCH1-209ENST00000437951 NRDCO43847 1150 aa15.21■□□□□ 0.03
PTCH1-209ENST00000437951 L1TD1Q5T7N2 865 aaKnown RBP15.19■□□□□ 0.02
PTCH1-209ENST00000437951 SCAF1Q9H7N4 1312 aaKnown RBP15.18■□□□□ 0.02
PTCH1-209ENST00000437951 CASC1Q6TDU7 716 aa15.16■□□□□ 0.02
PTCH1-209ENST00000437951 TMC1Q8TDI8 760 aa15.14■□□□□ 0.01
PTCH1-209ENST00000437951 WDR43Q15061 677 aaKnown RBP eCLIP15.12■□□□□ 0.01
PTCH1-209ENST00000437951 FBLN2P98095 1184 aa15.11■□□□□ 0.01
PTCH1-209ENST00000437951 FAM9BQ8IZU0 186 aa15.11■□□□□ 0.01
PTCH1-209ENST00000437951 NOP58Q9Y2X3 529 aaKnown RBP15.11■□□□□ 0.01
PTCH1-209ENST00000437951 MSNP26038 577 aaKnown RBP15.1■□□□□ 0.01
PTCH1-209ENST00000437951 PTMSP20962 102 aa15.09■□□□□ 0.01
PTCH1-209ENST00000437951 STAG3Q9UJ98 1225 aa15.06■□□□□ 0
PTCH1-209ENST00000437951 TNNT3P45378 269 aaPredicted RBP15.01□□□□□ -0.01
PTCH1-209ENST00000437951 USP35Q9P2H5 1018 aa15.01□□□□□ -0.01
PTCH1-209ENST00000437951 DDX10Q13206 875 aaKnown RBP15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms