Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 AC211486.1-202ENST00000416371 468 ntBASIC12.95□□□□□ -0.34
FOXA2Q9Y261 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 AC211476.1-201ENST00000503899 468 ntBASIC12.95□□□□□ -0.34
FOXA2Q9Y261 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 PRYP6-201ENST00000514804 343 ntBASIC12.95□□□□□ -0.34
FOXA2Q9Y261 EHF-205ENST00000527935 557 ntTSL 2 BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 PUS1-205ENST00000535067 838 ntTSL 3 BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 FHL2-212ENST00000607522 759 ntTSL 2 BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 AC136621.1-201ENST00000624017 2304 ntBASIC12.95□□□□□ -0.34
FOXA2Q9Y261 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC12.95□□□□□ -0.34
FOXA2Q9Y261 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 AC092850.2-201ENST00000623821 2697 ntBASIC12.94□□□□□ -0.34
FOXA2Q9Y261 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 AC087481.3-201ENST00000602886 1894 ntBASIC12.94□□□□□ -0.34
FOXA2Q9Y261 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 ADH5P3-201ENST00000433842 1137 ntBASIC12.94□□□□□ -0.34
FOXA2Q9Y261 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
FOXA2Q9Y261 DBET-201ENST00000630918 3363 ntBASIC12.94□□□□□ -0.34
FOXA2Q9Y261 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 SLC9A7P1-201ENST00000554295 3311 ntBASIC12.93□□□□□ -0.34
FOXA2Q9Y261 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 AP003680.1-201ENST00000598970 3660 ntBASIC12.93□□□□□ -0.34
FOXA2Q9Y261 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
FOXA2Q9Y261 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 62.8 ms