Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 KRT8P12-202ENST00000472924 1397 ntBASIC17.07■□□□□ 0.32
SIX2Q9NPC8 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC17.07■□□□□ 0.32
SIX2Q9NPC8 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 KRT8P44-201ENST00000441609 1350 ntBASIC17.06■□□□□ 0.32
SIX2Q9NPC8 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 CNN2P11-201ENST00000429351 262 ntBASIC17.06■□□□□ 0.32
SIX2Q9NPC8 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 AL512356.2-201ENST00000546955 174 ntBASIC17.06■□□□□ 0.32
SIX2Q9NPC8 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 MIR6080-201ENST00000617359 66 ntBASIC17.06■□□□□ 0.32
SIX2Q9NPC8 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 AC006058.4-201ENST00000624016 1670 ntBASIC17.06■□□□□ 0.32
SIX2Q9NPC8 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 CELP-203ENST00000624767 2414 ntTSL 5 BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SIX2Q9NPC8 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
SIX2Q9NPC8 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SIX2Q9NPC8 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SIX2Q9NPC8 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC17.05■□□□□ 0.32
SIX2Q9NPC8 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC17.05■□□□□ 0.32
SIX2Q9NPC8 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SIX2Q9NPC8 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC17.05■□□□□ 0.32
SIX2Q9NPC8 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC17.05■□□□□ 0.32
SIX2Q9NPC8 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC17.05■□□□□ 0.32
SIX2Q9NPC8 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC17.05■□□□□ 0.32
SIX2Q9NPC8 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SIX2Q9NPC8 AC091951.1-201ENST00000512854 2465 ntBASIC17.05■□□□□ 0.32
SIX2Q9NPC8 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC17.05■□□□□ 0.32
SIX2Q9NPC8 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms