Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC004449.1-201ENST00000564240 433 ntBASIC12.35□□□□□ -0.43
CCDC140Q96MF4 LSM12-202ENST00000585388 942 ntTSL 3 BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 AC006538.3-201ENST00000612495 578 ntBASIC12.35□□□□□ -0.43
CCDC140Q96MF4 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 LOX-206ENST00000639739 1626 ntTSL 5 BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 AC092850.2-201ENST00000623821 2697 ntBASIC12.35□□□□□ -0.43
CCDC140Q96MF4 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC12.35□□□□□ -0.43
CCDC140Q96MF4 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC12.35□□□□□ -0.43
CCDC140Q96MF4 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC12.34□□□□□ -0.43
CCDC140Q96MF4 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 KRT8P12-202ENST00000472924 1397 ntBASIC12.34□□□□□ -0.43
CCDC140Q96MF4 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 RAC2-202ENST00000401529 569 ntTSL 4 BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 HIST3H2BA-201ENST00000436555 524 ntBASIC12.34□□□□□ -0.43
CCDC140Q96MF4 METTL21AP1-201ENST00000438852 635 ntBASIC12.34□□□□□ -0.43
CCDC140Q96MF4 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 AC125807.1-201ENST00000483097 614 ntBASIC12.34□□□□□ -0.43
CCDC140Q96MF4 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 SUOX-214ENST00000551841 906 ntTSL 3 BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 MIR4313-201ENST00000580760 101 ntBASIC12.34□□□□□ -0.43
CCDC140Q96MF4 AC015911.4-201ENST00000588022 1070 ntBASIC12.34□□□□□ -0.43
CCDC140Q96MF4 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 AL589739.1-201ENST00000607720 493 ntBASIC12.34□□□□□ -0.43
CCDC140Q96MF4 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 CETN4P-206ENST00000642099 2168 ntBASIC12.34□□□□□ -0.43
CCDC140Q96MF4 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 TUBB3P1-201ENST00000405796 1332 ntBASIC12.34□□□□□ -0.43
CCDC140Q96MF4 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
CCDC140Q96MF4 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 AL139384.1-201ENST00000612143 3047 ntBASIC12.33□□□□□ -0.44
CCDC140Q96MF4 TKT-202ENST00000423516 2075 ntTSL 2 BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 KLK8-202ENST00000320838 456 ntTSL 5 BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 WRB-204ENST00000398753 699 ntTSL 3 BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CCDC140Q96MF4 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms