Protein–RNA interactions for Protein: Q96HC4

PDLIM5, PDZ and LIM domain protein 5, humanhuman

Known RBP Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5Q96HC4 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
PDLIM5Q96HC4 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
PDLIM5Q96HC4 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC15.57■□□□□ 0.08
PDLIM5Q96HC4 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
PDLIM5Q96HC4 SPIB-207ENST00000597855 564 ntTSL 4 BASIC15.57■□□□□ 0.08
PDLIM5Q96HC4 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC15.57■□□□□ 0.08
PDLIM5Q96HC4 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PDLIM5Q96HC4 GOLGA6L17P-202ENST00000614358 1398 ntBASIC15.57■□□□□ 0.08
PDLIM5Q96HC4 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC15.57■□□□□ 0.08
PDLIM5Q96HC4 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PDLIM5Q96HC4 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
PDLIM5Q96HC4 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC15.57■□□□□ 0.08
PDLIM5Q96HC4 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.57■□□□□ 0.08
PDLIM5Q96HC4 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC15.57■□□□□ 0.08
PDLIM5Q96HC4 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PDLIM5Q96HC4 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PDLIM5Q96HC4 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PDLIM5Q96HC4 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 GSN-206ENST00000394353 2311 ntTSL 2 BASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 CNN2P11-201ENST00000429351 262 ntBASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 AC092865.5-201ENST00000545435 363 ntBASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 CALM1-205ENST00000553542 877 ntTSL 5 BASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PDLIM5Q96HC4 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 NME2-201ENST00000393183 568 ntTSL 2 BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 HLA-J-203ENST00000494367 1087 ntBASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 MIR4453-201ENST00000584019 89 ntBASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 COQ4-205ENST00000609948 956 ntTSL 2 BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 AC134684.3-201ENST00000641758 218 ntBASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
PDLIM5Q96HC4 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PDLIM5Q96HC4 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 804.8 ms