Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 NOP2-220ENST00000545915 630 ntTSL 2 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 STX3-203ENST00000529177 1571 ntTSL 2 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 LINC00895-201ENST00000629028 1637 ntBASIC4.98□□□□□ -1.61
SYNE1Q8NF91 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 BMP2-201ENST00000378827 3601 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 AC022144.1-201ENST00000602255 1580 ntBASIC4.98□□□□□ -1.61
SYNE1Q8NF91 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 AC241585.1-201ENST00000433527 519 ntBASIC4.98□□□□□ -1.61
SYNE1Q8NF91 RPS2P32-201ENST00000439199 892 ntBASIC4.98□□□□□ -1.61
SYNE1Q8NF91 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 AC018529.1-201ENST00000613063 361 ntBASIC4.98□□□□□ -1.61
SYNE1Q8NF91 AL662799.1-202ENST00000614205 422 ntBASIC4.98□□□□□ -1.61
SYNE1Q8NF91 AC073592.8-201ENST00000624126 511 ntBASIC4.98□□□□□ -1.61
SYNE1Q8NF91 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 RNU1-129P-201ENST00000384064 167 ntBASIC4.98□□□□□ -1.61
SYNE1Q8NF91 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 ACA64.2-201ENST00000459014 129 ntBASIC4.98□□□□□ -1.61
SYNE1Q8NF91 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 ARL16-202ENST00000570561 768 ntTSL 2 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 U1.21-201ENST00000580816 167 ntBASIC4.98□□□□□ -1.61
SYNE1Q8NF91 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
SYNE1Q8NF91 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 MEX3B-202ENST00000558133 4333 ntBASIC4.97□□□□□ -1.61
SYNE1Q8NF91 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 SLC22A20-204ENST00000530038 1673 ntBASIC4.97□□□□□ -1.61
SYNE1Q8NF91 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 PP14571-201ENST00000404327 934 ntTSL 2 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 ZNF890P-202ENST00000530367 1156 ntBASIC4.97□□□□□ -1.61
SYNE1Q8NF91 COQ6-210ENST00000554920 649 ntTSL 3 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 AC010319.3-201ENST00000597028 470 ntBASIC4.97□□□□□ -1.61
SYNE1Q8NF91 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 NFKB1-202ENST00000394820 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms