Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC093726.1-201ENST00000608064 963 ntBASIC15.39■□□□□ 0.05
COL28A1Q2UY09 AL133215.2-201ENST00000609242 977 ntBASIC15.39■□□□□ 0.05
COL28A1Q2UY09 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 HARS-204ENST00000438307 1789 ntTSL 2 BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
COL28A1Q2UY09 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 RNF216P1-203ENST00000404404 2427 ntBASIC15.38■□□□□ 0.05
COL28A1Q2UY09 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 AL391256.1-201ENST00000443260 1855 ntBASIC15.38■□□□□ 0.05
COL28A1Q2UY09 AC008741.2-201ENST00000612792 3115 ntBASIC15.38■□□□□ 0.05
COL28A1Q2UY09 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 FRMD6-AS1-201ENST00000617151 2229 ntBASIC15.38■□□□□ 0.05
COL28A1Q2UY09 RPS19-201ENST00000221975 500 ntTSL 3 BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 NSL1-201ENST00000366976 722 ntTSL 2 BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 SLC25A24P2-201ENST00000415059 510 ntBASIC15.38■□□□□ 0.05
COL28A1Q2UY09 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 RNA5SP412-201ENST00000516234 123 ntBASIC15.38■□□□□ 0.05
COL28A1Q2UY09 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 BANF1P1-201ENST00000553684 263 ntBASIC15.38■□□□□ 0.05
COL28A1Q2UY09 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 AC010319.3-201ENST00000597028 470 ntBASIC15.38■□□□□ 0.05
COL28A1Q2UY09 AC106872.11-201ENST00000605838 421 ntBASIC15.38■□□□□ 0.05
COL28A1Q2UY09 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 FOXO1B-201ENST00000504678 1527 ntBASIC15.38■□□□□ 0.05
COL28A1Q2UY09 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
COL28A1Q2UY09 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 LINC00895-201ENST00000629028 1637 ntBASIC15.37■□□□□ 0.05
COL28A1Q2UY09 LINC02199-201ENST00000506655 2702 ntBASIC15.37■□□□□ 0.05
COL28A1Q2UY09 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms