Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC9.61□□□□□ -0.87
HSPG2P98160 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC9.61□□□□□ -0.87
HSPG2P98160 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC9.61□□□□□ -0.87
HSPG2P98160 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
HSPG2P98160 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
HSPG2P98160 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC9.61□□□□□ -0.87
HSPG2P98160 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC9.61□□□□□ -0.87
HSPG2P98160 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC9.61□□□□□ -0.87
HSPG2P98160 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
HSPG2P98160 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC9.61□□□□□ -0.87
HSPG2P98160 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC9.61□□□□□ -0.87
HSPG2P98160 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC9.61□□□□□ -0.87
HSPG2P98160 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC9.61□□□□□ -0.87
HSPG2P98160 STUB1-204ENST00000564370 875 ntTSL 2 BASIC9.61□□□□□ -0.87
HSPG2P98160 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
HSPG2P98160 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
HSPG2P98160 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
HSPG2P98160 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
HSPG2P98160 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC9.61□□□□□ -0.87
HSPG2P98160 PCDHB18P-201ENST00000524813 2368 ntBASIC9.61□□□□□ -0.87
HSPG2P98160 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
HSPG2P98160 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC9.61□□□□□ -0.87
HSPG2P98160 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC9.61□□□□□ -0.87
HSPG2P98160 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC9.61□□□□□ -0.87
HSPG2P98160 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
HSPG2P98160 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
HSPG2P98160 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC9.61□□□□□ -0.87
HSPG2P98160 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC9.61□□□□□ -0.87
HSPG2P98160 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
HSPG2P98160 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC9.61□□□□□ -0.87
HSPG2P98160 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC9.61□□□□□ -0.87
HSPG2P98160 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC9.61□□□□□ -0.87
HSPG2P98160 AC073150.1-201ENST00000450406 1084 ntBASIC9.61□□□□□ -0.87
HSPG2P98160 RNMTL1P1-201ENST00000454103 560 ntBASIC9.61□□□□□ -0.87
HSPG2P98160 RPL18AP3-201ENST00000462885 528 ntBASIC9.61□□□□□ -0.87
HSPG2P98160 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC9.61□□□□□ -0.87
HSPG2P98160 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC9.61□□□□□ -0.87
HSPG2P98160 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC9.61□□□□□ -0.87
HSPG2P98160 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC9.61□□□□□ -0.87
HSPG2P98160 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
HSPG2P98160 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
HSPG2P98160 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC9.6□□□□□ -0.87
HSPG2P98160 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC9.6□□□□□ -0.87
HSPG2P98160 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
HSPG2P98160 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
HSPG2P98160 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
HSPG2P98160 AL357373.1-201ENST00000394974 322 ntBASIC9.6□□□□□ -0.87
HSPG2P98160 RN7SL396P-201ENST00000471086 295 ntBASIC9.6□□□□□ -0.87
HSPG2P98160 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC9.6□□□□□ -0.87
HSPG2P98160 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC9.6□□□□□ -0.87
HSPG2P98160 AC027237.1-201ENST00000560942 655 ntBASIC9.6□□□□□ -0.87
HSPG2P98160 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC9.6□□□□□ -0.87
HSPG2P98160 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC9.6□□□□□ -0.87
HSPG2P98160 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
HSPG2P98160 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC9.6□□□□□ -0.87
HSPG2P98160 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC9.6□□□□□ -0.87
HSPG2P98160 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC9.6□□□□□ -0.87
HSPG2P98160 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC9.6□□□□□ -0.87
HSPG2P98160 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC9.6□□□□□ -0.87
HSPG2P98160 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC9.6□□□□□ -0.87
HSPG2P98160 POLL-217ENST00000628479 1953 ntTSL 5 BASIC9.6□□□□□ -0.87
HSPG2P98160 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
HSPG2P98160 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC9.6□□□□□ -0.87
HSPG2P98160 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
HSPG2P98160 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC9.6□□□□□ -0.87
HSPG2P98160 PAQR9-AS1-203ENST00000497652 516 ntTSL 3 BASIC9.6□□□□□ -0.87
HSPG2P98160 RBM8B-201ENST00000555532 525 ntBASIC9.6□□□□□ -0.87
HSPG2P98160 FO393412.1-201ENST00000619841 382 ntBASIC9.6□□□□□ -0.87
HSPG2P98160 AL592295.3-201ENST00000637155 863 ntTSL 5 BASIC9.6□□□□□ -0.87
HSPG2P98160 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
HSPG2P98160 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC9.6□□□□□ -0.87
HSPG2P98160 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
HSPG2P98160 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC9.6□□□□□ -0.87
HSPG2P98160 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC9.6□□□□□ -0.87
HSPG2P98160 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
HSPG2P98160 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC9.6□□□□□ -0.87
HSPG2P98160 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC9.6□□□□□ -0.87
HSPG2P98160 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC9.6□□□□□ -0.87
HSPG2P98160 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
HSPG2P98160 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC9.6□□□□□ -0.87
HSPG2P98160 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC9.6□□□□□ -0.87
HSPG2P98160 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
HSPG2P98160 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC9.6□□□□□ -0.87
HSPG2P98160 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
HSPG2P98160 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
HSPG2P98160 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC9.6□□□□□ -0.87
HSPG2P98160 UROS-201ENST00000368774 744 ntTSL 2 BASIC9.59□□□□□ -0.87
HSPG2P98160 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
HSPG2P98160 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
HSPG2P98160 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
HSPG2P98160 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC9.59□□□□□ -0.87
HSPG2P98160 AC073911.3-201ENST00000624401 631 ntBASIC9.59□□□□□ -0.87
HSPG2P98160 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC9.59□□□□□ -0.87
HSPG2P98160 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC9.59□□□□□ -0.87
HSPG2P98160 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
HSPG2P98160 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC9.59□□□□□ -0.87
HSPG2P98160 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC9.59□□□□□ -0.87
HSPG2P98160 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
HSPG2P98160 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
HSPG2P98160 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC9.59□□□□□ -0.87
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms