Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
SRP54P61011 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SRP54P61011 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC15.78■□□□□ 0.12
SRP54P61011 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
SRP54P61011 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SRP54P61011 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
SRP54P61011 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SRP54P61011 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
SRP54P61011 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.78■□□□□ 0.12
SRP54P61011 CA12-203ENST00000422263 2556 ntTSL 2 BASIC15.78■□□□□ 0.12
SRP54P61011 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SRP54P61011 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
SRP54P61011 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SRP54P61011 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
SRP54P61011 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
SRP54P61011 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SRP54P61011 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SRP54P61011 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC15.77■□□□□ 0.12
SRP54P61011 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SRP54P61011 AL391825.1-201ENST00000457671 1364 ntBASIC15.77■□□□□ 0.12
SRP54P61011 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
SRP54P61011 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC15.77■□□□□ 0.12
SRP54P61011 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
SRP54P61011 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SRP54P61011 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC15.77■□□□□ 0.12
SRP54P61011 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SRP54P61011 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SRP54P61011 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC15.77■□□□□ 0.12
SRP54P61011 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC15.77■□□□□ 0.12
SRP54P61011 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
SRP54P61011 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC15.77■□□□□ 0.12
SRP54P61011 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC15.77■□□□□ 0.12
SRP54P61011 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC15.77■□□□□ 0.12
SRP54P61011 CD81-207ENST00000481687 890 ntTSL 2 BASIC15.77■□□□□ 0.12
SRP54P61011 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC15.77■□□□□ 0.12
SRP54P61011 SUOX-214ENST00000551841 906 ntTSL 3 BASIC15.77■□□□□ 0.12
SRP54P61011 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC15.77■□□□□ 0.12
SRP54P61011 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC15.77■□□□□ 0.12
SRP54P61011 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC15.77■□□□□ 0.12
SRP54P61011 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC15.77■□□□□ 0.12
SRP54P61011 AC025048.3-201ENST00000590609 569 ntBASIC15.77■□□□□ 0.12
SRP54P61011 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SRP54P61011 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
SRP54P61011 AC074044.1-201ENST00000609673 707 ntBASIC15.77■□□□□ 0.12
SRP54P61011 AC005702.4-201ENST00000618393 416 ntBASIC15.77■□□□□ 0.12
SRP54P61011 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
SRP54P61011 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC15.77■□□□□ 0.12
SRP54P61011 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SRP54P61011 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
SRP54P61011 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
SRP54P61011 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
SRP54P61011 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SRP54P61011 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC15.77■□□□□ 0.11
SRP54P61011 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
SRP54P61011 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SRP54P61011 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
SRP54P61011 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
SRP54P61011 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC15.77■□□□□ 0.11
SRP54P61011 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC15.77■□□□□ 0.11
SRP54P61011 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
SRP54P61011 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SRP54P61011 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
SRP54P61011 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.77■□□□□ 0.11
SRP54P61011 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC15.77■□□□□ 0.11
SRP54P61011 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC15.77■□□□□ 0.11
SRP54P61011 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SRP54P61011 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15.76■□□□□ 0.11
SRP54P61011 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
SRP54P61011 PCDH8P1-201ENST00000428983 2773 ntBASIC15.76■□□□□ 0.11
SRP54P61011 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SRP54P61011 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
SRP54P61011 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SRP54P61011 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
SRP54P61011 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SRP54P61011 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SRP54P61011 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SRP54P61011 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SRP54P61011 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SRP54P61011 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SRP54P61011 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SRP54P61011 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SRP54P61011 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC15.76■□□□□ 0.11
SRP54P61011 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SRP54P61011 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC15.76■□□□□ 0.11
SRP54P61011 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SRP54P61011 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC15.76■□□□□ 0.11
SRP54P61011 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC15.76■□□□□ 0.11
SRP54P61011 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC15.76■□□□□ 0.11
SRP54P61011 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
SRP54P61011 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC15.76■□□□□ 0.11
SRP54P61011 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SRP54P61011 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SRP54P61011 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC15.76■□□□□ 0.11
SRP54P61011 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SRP54P61011 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC15.76■□□□□ 0.11
SRP54P61011 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SRP54P61011 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SRP54P61011 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SRP54P61011 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SRP54P61011 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms