Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTPN4P29074 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
PTPN4P29074 AC068137.2-201ENST00000605408 478 ntBASIC16.11■□□□□ 0.17
PTPN4P29074 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.11■□□□□ 0.17
PTPN4P29074 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
PTPN4P29074 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
PTPN4P29074 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTPN4P29074 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PTPN4P29074 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC16.11■□□□□ 0.17
PTPN4P29074 PGR-210ENST00000619228 3038 ntTSL 5 BASIC16.11■□□□□ 0.17
PTPN4P29074 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTPN4P29074 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTPN4P29074 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
PTPN4P29074 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC16.11■□□□□ 0.17
PTPN4P29074 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
PTPN4P29074 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC16.11■□□□□ 0.17
PTPN4P29074 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC16.11■□□□□ 0.17
PTPN4P29074 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC16.11■□□□□ 0.17
PTPN4P29074 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTPN4P29074 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
PTPN4P29074 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC16.11■□□□□ 0.17
PTPN4P29074 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PTPN4P29074 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC16.11■□□□□ 0.17
PTPN4P29074 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTPN4P29074 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC16.11■□□□□ 0.17
PTPN4P29074 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTPN4P29074 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC16.11■□□□□ 0.17
PTPN4P29074 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN4P29074 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
PTPN4P29074 SNX33P1-201ENST00000592116 1762 ntBASIC16.1■□□□□ 0.17
PTPN4P29074 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN4P29074 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN4P29074 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
PTPN4P29074 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN4P29074 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
PTPN4P29074 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN4P29074 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN4P29074 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN4P29074 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN4P29074 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN4P29074 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN4P29074 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN4P29074 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
PTPN4P29074 AL645939.2-201ENST00000427340 991 ntBASIC16.1■□□□□ 0.17
PTPN4P29074 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC16.1■□□□□ 0.17
PTPN4P29074 RFPL4AP1-201ENST00000530883 850 ntBASIC16.1■□□□□ 0.17
PTPN4P29074 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN4P29074 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.1■□□□□ 0.17
PTPN4P29074 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC16.1■□□□□ 0.17
PTPN4P29074 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
PTPN4P29074 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN4P29074 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
PTPN4P29074 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN4P29074 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.1■□□□□ 0.17
PTPN4P29074 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN4P29074 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC16.1■□□□□ 0.17
PTPN4P29074 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
PTPN4P29074 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN4P29074 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC16.1■□□□□ 0.17
PTPN4P29074 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN4P29074 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN4P29074 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
PTPN4P29074 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN4P29074 AL359258.3-201ENST00000622910 2331 ntBASIC16.1■□□□□ 0.17
PTPN4P29074 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC16.09■□□□□ 0.17
PTPN4P29074 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
PTPN4P29074 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN4P29074 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC16.09■□□□□ 0.17
PTPN4P29074 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN4P29074 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN4P29074 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC16.09■□□□□ 0.17
PTPN4P29074 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
PTPN4P29074 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN4P29074 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC16.09■□□□□ 0.17
PTPN4P29074 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC16.09■□□□□ 0.17
PTPN4P29074 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN4P29074 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN4P29074 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN4P29074 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
PTPN4P29074 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC16.09■□□□□ 0.17
PTPN4P29074 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN4P29074 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN4P29074 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN4P29074 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN4P29074 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN4P29074 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN4P29074 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN4P29074 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC16.09■□□□□ 0.17
PTPN4P29074 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC16.09■□□□□ 0.17
PTPN4P29074 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
PTPN4P29074 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC16.09■□□□□ 0.17
PTPN4P29074 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN4P29074 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN4P29074 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN4P29074 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
PTPN4P29074 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN4P29074 MIR648-201ENST00000385046 94 ntBASIC16.09■□□□□ 0.17
PTPN4P29074 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
PTPN4P29074 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC16.09■□□□□ 0.17
PTPN4P29074 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms