Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RXRBP28702 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC20.42■□□□□ 0.86
RXRBP28702 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RXRBP28702 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
RXRBP28702 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC20.42■□□□□ 0.86
RXRBP28702 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC20.42■□□□□ 0.86
RXRBP28702 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC20.42■□□□□ 0.86
RXRBP28702 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RXRBP28702 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RXRBP28702 AL645728.1-201ENST00000366221 2101 ntBASIC20.42■□□□□ 0.86
RXRBP28702 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC20.42■□□□□ 0.86
RXRBP28702 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RXRBP28702 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RXRBP28702 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
RXRBP28702 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RXRBP28702 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RXRBP28702 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC20.42■□□□□ 0.86
RXRBP28702 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RXRBP28702 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RXRBP28702 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC20.41■□□□□ 0.86
RXRBP28702 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
RXRBP28702 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RXRBP28702 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
RXRBP28702 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
RXRBP28702 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RXRBP28702 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
RXRBP28702 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RXRBP28702 AL136309.1-201ENST00000403917 691 ntBASIC20.41■□□□□ 0.86
RXRBP28702 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC20.41■□□□□ 0.86
RXRBP28702 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC20.41■□□□□ 0.86
RXRBP28702 AL592076.1-201ENST00000424448 303 ntBASIC20.41■□□□□ 0.86
RXRBP28702 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RXRBP28702 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC20.41■□□□□ 0.86
RXRBP28702 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC20.41■□□□□ 0.86
RXRBP28702 RN7SL258P-201ENST00000478664 300 ntBASIC20.41■□□□□ 0.86
RXRBP28702 RCC2P8-201ENST00000502779 1035 ntBASIC20.41■□□□□ 0.86
RXRBP28702 SCARNA21-201ENST00000517026 139 ntBASIC20.41■□□□□ 0.86
RXRBP28702 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
RXRBP28702 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC20.41■□□□□ 0.86
RXRBP28702 STUB1-204ENST00000564370 875 ntTSL 2 BASIC20.41■□□□□ 0.86
RXRBP28702 AC105137.3-201ENST00000617588 984 ntBASIC20.41■□□□□ 0.86
RXRBP28702 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RXRBP28702 MRPL37P1-201ENST00000592451 1337 ntBASIC20.41■□□□□ 0.86
RXRBP28702 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
RXRBP28702 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
RXRBP28702 FAM90A2P-201ENST00000511144 1395 ntBASIC20.41■□□□□ 0.86
RXRBP28702 FAM90A25P-201ENST00000528404 1395 ntBASIC20.41■□□□□ 0.86
RXRBP28702 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RXRBP28702 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RXRBP28702 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC20.41■□□□□ 0.86
RXRBP28702 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RXRBP28702 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RXRBP28702 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RXRBP28702 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC20.41■□□□□ 0.86
RXRBP28702 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC20.41■□□□□ 0.86
RXRBP28702 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC20.41■□□□□ 0.86
RXRBP28702 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RXRBP28702 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RXRBP28702 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC20.41■□□□□ 0.86
RXRBP28702 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RXRBP28702 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
RXRBP28702 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
RXRBP28702 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RXRBP28702 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC20.4■□□□□ 0.86
RXRBP28702 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC20.4■□□□□ 0.86
RXRBP28702 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC20.4■□□□□ 0.86
RXRBP28702 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC20.4■□□□□ 0.86
RXRBP28702 BCAS2P2-201ENST00000425064 674 ntBASIC20.4■□□□□ 0.86
RXRBP28702 RHBDF1P1-201ENST00000427504 1941 ntBASIC20.4■□□□□ 0.86
RXRBP28702 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC20.4■□□□□ 0.86
RXRBP28702 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC20.4■□□□□ 0.86
RXRBP28702 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RXRBP28702 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC20.4■□□□□ 0.86
RXRBP28702 AC026410.1-201ENST00000507366 1101 ntBASIC20.4■□□□□ 0.86
RXRBP28702 CAP2P1-201ENST00000557743 1390 ntBASIC20.4■□□□□ 0.86
RXRBP28702 MIR5196-201ENST00000578146 115 ntBASIC20.4■□□□□ 0.86
RXRBP28702 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC20.4■□□□□ 0.86
RXRBP28702 AL132994.2-201ENST00000603120 687 ntBASIC20.4■□□□□ 0.86
RXRBP28702 AC097359.3-201ENST00000603982 1210 ntBASIC20.4■□□□□ 0.86
RXRBP28702 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC20.4■□□□□ 0.86
RXRBP28702 AL162426.1-201ENST00000624141 743 ntBASIC20.4■□□□□ 0.86
RXRBP28702 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC20.4■□□□□ 0.86
RXRBP28702 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
RXRBP28702 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RXRBP28702 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RXRBP28702 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RXRBP28702 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
RXRBP28702 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC20.39■□□□□ 0.86
RXRBP28702 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC20.39■□□□□ 0.86
RXRBP28702 POLL-217ENST00000628479 1953 ntTSL 5 BASIC20.39■□□□□ 0.86
RXRBP28702 ABALON-201ENST00000629058 1903 ntBASIC20.39■□□□□ 0.86
RXRBP28702 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC20.39■□□□□ 0.86
RXRBP28702 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
RXRBP28702 AMT-204ENST00000427987 1646 ntTSL 5 BASIC20.39■□□□□ 0.86
RXRBP28702 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RXRBP28702 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC20.39■□□□□ 0.85
RXRBP28702 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC20.39■□□□□ 0.85
RXRBP28702 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RXRBP28702 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC20.39■□□□□ 0.85
RXRBP28702 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms